Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PRR20FP-201ENST00000603320 180 ntBASIC18.34■□□□□ 0.53
COL18A1P39060 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC18.34■□□□□ 0.53
COL18A1P39060 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL18A1P39060 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
COL18A1P39060 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL18A1P39060 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL18A1P39060 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL18A1P39060 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC18.33■□□□□ 0.53
COL18A1P39060 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
COL18A1P39060 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL18A1P39060 AC007279.1-201ENST00000448547 837 ntBASIC18.33■□□□□ 0.53
COL18A1P39060 AC005077.3-201ENST00000449614 213 ntBASIC18.33■□□□□ 0.53
COL18A1P39060 AC011431.1-201ENST00000512971 230 ntBASIC18.33■□□□□ 0.53
COL18A1P39060 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
COL18A1P39060 OR4A49P-201ENST00000527050 632 ntBASIC18.33■□□□□ 0.53
COL18A1P39060 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC18.33■□□□□ 0.53
COL18A1P39060 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC18.33■□□□□ 0.53
COL18A1P39060 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL18A1P39060 MEP1AP1-201ENST00000636082 1097 ntBASIC18.33■□□□□ 0.53
COL18A1P39060 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL18A1P39060 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL18A1P39060 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC18.33■□□□□ 0.52
COL18A1P39060 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
COL18A1P39060 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL18A1P39060 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC18.33■□□□□ 0.52
COL18A1P39060 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CCL19-202ENST00000378800 414 ntTSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC18.32■□□□□ 0.52
COL18A1P39060 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC18.32■□□□□ 0.52
COL18A1P39060 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC18.32■□□□□ 0.52
COL18A1P39060 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC18.32■□□□□ 0.52
COL18A1P39060 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC18.32■□□□□ 0.52
COL18A1P39060 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC18.32■□□□□ 0.52
COL18A1P39060 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 AC011477.7-201ENST00000617163 1440 ntBASIC18.32■□□□□ 0.52
COL18A1P39060 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 PTN-202ENST00000393083 1599 ntTSL 5 BASIC18.32■□□□□ 0.52
COL18A1P39060 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC18.32■□□□□ 0.52
COL18A1P39060 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC18.32■□□□□ 0.52
COL18A1P39060 AC010900.1-201ENST00000449849 1296 ntBASIC18.32■□□□□ 0.52
COL18A1P39060 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC18.32■□□□□ 0.52
COL18A1P39060 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
COL18A1P39060 RN7SL524P-201ENST00000581152 300 ntBASIC18.32■□□□□ 0.52
COL18A1P39060 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL18A1P39060 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC18.32■□□□□ 0.52
COL18A1P39060 AC106782.5-201ENST00000616011 337 ntBASIC18.32■□□□□ 0.52
COL18A1P39060 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
COL18A1P39060 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL18A1P39060 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL18A1P39060 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms