Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR632-201ENST00000385193 94 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 SNRPD2P2-201ENST00000473818 333 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 AC092910.2-201ENST00000491262 348 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
COL5A3P25940 AC048382.6-201ENST00000621980 1223 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 AC015802.1-201ENST00000588104 1449 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
COL5A3P25940 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL5A3P25940 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL5A3P25940 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
COL5A3P25940 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 HSD3BP1-201ENST00000286193 1111 ntBASIC17.5■□□□□ 0.39
COL5A3P25940 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC17.5■□□□□ 0.39
COL5A3P25940 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.5■□□□□ 0.39
COL5A3P25940 GRAMD4P6-201ENST00000556999 244 ntBASIC17.5■□□□□ 0.39
COL5A3P25940 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.5■□□□□ 0.39
COL5A3P25940 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC17.5■□□□□ 0.39
COL5A3P25940 AC005077.3-201ENST00000449614 213 ntBASIC17.5■□□□□ 0.39
COL5A3P25940 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL5A3P25940 AC233724.9-201ENST00000511694 407 ntBASIC17.5■□□□□ 0.39
COL5A3P25940 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC17.5■□□□□ 0.39
COL5A3P25940 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.5■□□□□ 0.39
COL5A3P25940 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC17.5■□□□□ 0.39
COL5A3P25940 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.49■□□□□ 0.39
COL5A3P25940 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL5A3P25940 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL5A3P25940 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.49■□□□□ 0.39
COL5A3P25940 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL5A3P25940 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
COL5A3P25940 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC17.49■□□□□ 0.39
COL5A3P25940 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.49■□□□□ 0.39
COL5A3P25940 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC17.49■□□□□ 0.39
COL5A3P25940 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL5A3P25940 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC17.49■□□□□ 0.39
COL5A3P25940 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL5A3P25940 AC106782.5-201ENST00000616011 337 ntBASIC17.49■□□□□ 0.39
COL5A3P25940 AC009041.4-201ENST00000620075 638 ntBASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms