Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PCNAP12004 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
PCNAP12004 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.2□□□□□ -0.14
PCNAP12004 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PCNAP12004 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
PCNAP12004 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 RN7SL832P-201ENST00000607781 1756 ntBASIC14.2□□□□□ -0.14
PCNAP12004 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 MIR1202-201ENST00000408529 83 ntBASIC14.2□□□□□ -0.14
PCNAP12004 AC004945.1-201ENST00000416738 983 ntBASIC14.2□□□□□ -0.14
PCNAP12004 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 CROCCP4-201ENST00000457096 498 ntBASIC14.2□□□□□ -0.14
PCNAP12004 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 COX5BP1-201ENST00000507622 393 ntBASIC14.2□□□□□ -0.14
PCNAP12004 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.2□□□□□ -0.14
PCNAP12004 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC14.2□□□□□ -0.14
PCNAP12004 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.2□□□□□ -0.14
PCNAP12004 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
PCNAP12004 AC006453.4-201ENST00000636949 1252 ntBASIC14.2□□□□□ -0.14
PCNAP12004 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 MAPT-IT1-201ENST00000624111 3016 ntBASIC14.2□□□□□ -0.14
PCNAP12004 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.2□□□□□ -0.14
PCNAP12004 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 AC005562.1-201ENST00000583030 3219 ntBASIC14.2□□□□□ -0.14
PCNAP12004 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 AC215219.1-201ENST00000400706 1817 ntBASIC14.2□□□□□ -0.14
PCNAP12004 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
PCNAP12004 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCNAP12004 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.19□□□□□ -0.14
PCNAP12004 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PCNAP12004 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.19□□□□□ -0.14
PCNAP12004 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCNAP12004 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms