Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGB1P09429 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HMGB1P09429 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB1P09429 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB1P09429 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HMGB1P09429 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB1P09429 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB1P09429 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
HMGB1P09429 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 KRT18P36-201ENST00000411618 1276 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB1P09429 POM121L10P-201ENST00000436994 1285 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 GOLGA2P4-201ENST00000441462 777 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 RPL13AP20-201ENST00000459725 609 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGB1P09429 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 AL583810.1-201ENST00000553344 1045 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 BNIP3P13-201ENST00000599968 566 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 AC239800.4-201ENST00000603712 296 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 AL096828.3-201ENST00000615354 462 ntBASIC17.05■□□□□ 0.32
HMGB1P09429 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.05■□□□□ 0.32
HMGB1P09429 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGB1P09429 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGB1P09429 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGB1P09429 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HMGB1P09429 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB1P09429 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGB1P09429 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGB1P09429 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 CCT8L1P-201ENST00000465400 1674 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 TUBB1P2-201ENST00000422712 1306 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 TUBB1P1-201ENST00000503144 1300 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HMGB1P09429 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 XBP1P1-201ENST00000436573 652 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 VDAC1P1-201ENST00000439229 848 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 RPL18P13-201ENST00000478088 569 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB1P09429 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGB1P09429 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 AL512310.5-201ENST00000551999 515 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.04■□□□□ 0.32
HMGB1P09429 AC005730.2-201ENST00000564549 1184 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 AC008805.1-201ENST00000590892 364 ntBASIC17.04■□□□□ 0.32
HMGB1P09429 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.04■□□□□ 0.32
HMGB1P09429 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.04■□□□□ 0.32
HMGB1P09429 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.04■□□□□ 0.32
HMGB1P09429 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGB1P09429 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms