Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.92□□□□□ -0.18
VPS29Q9UBQ0 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AC089987.1-201ENST00000551654 2209 ntBASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 TMBIM7P-202ENST00000641474 1516 ntBASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AC087386.2-201ENST00000623212 4637 ntBASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 KLF2P4-201ENST00000451959 1225 ntBASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AP006547.1-201ENST00000563435 692 ntBASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
VPS29Q9UBQ0 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 E2F3P2-201ENST00000447755 1422 ntBASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 AC026954.1-201ENST00000429771 1293 ntBASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 AC008687.7-202ENST00000637404 953 ntBASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 AC130686.1-201ENST00000622936 2466 ntBASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS29Q9UBQ0 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
VPS29Q9UBQ0 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms