Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 EIF4HP1-201ENST00000453115 687 ntBASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC006122.1-201ENST00000493323 440 ntBASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 SORD2P-201ENST00000558556 1069 ntBASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC138649.2-201ENST00000615886 705 ntBASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TRIM39Q9HCM9 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 BX284668.4-201ENST00000453917 508 ntBASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MARK2P5-201ENST00000507649 634 ntBASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SCARNA20.5-201ENST00000516991 142 ntBASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 AC133540.1-201ENST00000620845 1019 ntBASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 CYP4F23P-201ENST00000593402 1579 ntBASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM39Q9HCM9 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms