Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MIR193BHG-211ENST00000641433 5365 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 RPL8P2-201ENST00000430538 502 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 AC098935.1-201ENST00000446057 611 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 RN7SL555P-201ENST00000584742 339 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MIR6769A-201ENST00000617340 73 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 COX6A1P2-201ENST00000620597 330 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 AL805961.1-201ENST00000642026 753 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 CAP2P1-201ENST00000557743 1390 ntBASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC3Q9BQI4 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC007686.3-201ENST00000619017 3487 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC015656.1-201ENST00000624209 3578 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC026320.2-201ENST00000434379 478 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 RN7SL181P-201ENST00000462921 277 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC103810.10-201ENST00000606504 343 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 MEG3_2.1-201ENST00000611456 105 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC092299.1-201ENST00000632679 757 ntBASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC3Q9BQI4 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms