Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 PYY2-201ENST00000315776 282 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 MIR1227-201ENST00000408484 88 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC068867.1-201ENST00000559855 150 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 RN7SL357P-201ENST00000581065 298 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC005357.2-202ENST00000590507 1060 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 PCDHA3-202ENST00000532566 4594 ntBASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NPAS3Q8IXF0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 C2orf69P1-201ENST00000563532 1093 ntBASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC005586.2-201ENST00000563946 837 ntBASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AGAP7P-201ENST00000582299 2062 ntBASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 AGAP14-201ENST00000624701 2060 ntBASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
NPAS3Q8IXF0 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
NPAS3Q8IXF0 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms