Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXA1P49639 AC254562.1-201ENST00000417586 456 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXA1P49639 AC112482.1-201ENST00000492080 688 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXA1P49639 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 VPS29-207ENST00000549970 818 ntTSL 3 BASIC12.14□□□□□ -0.47
HOXA1P49639 SNHG9-202ENST00000564014 471 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.14□□□□□ -0.47
HOXA1P49639 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC12.14□□□□□ -0.47
HOXA1P49639 MEX3B-202ENST00000558133 4333 ntBASIC12.14□□□□□ -0.47
HOXA1P49639 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HOXA1P49639 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 AC010969.2-201ENST00000602458 3231 ntBASIC12.13□□□□□ -0.47
HOXA1P49639 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 CCT7P1-201ENST00000406551 1611 ntBASIC12.13□□□□□ -0.47
HOXA1P49639 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 RPSAP43-201ENST00000402237 625 ntBASIC12.13□□□□□ -0.47
HOXA1P49639 UPF3AP3-201ENST00000420996 769 ntBASIC12.13□□□□□ -0.47
HOXA1P49639 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXA1P49639 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXA1P49639 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.13□□□□□ -0.47
HOXA1P49639 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 PNPLA8-206ENST00000436062 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 HTR5A-201ENST00000287907 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.13□□□□□ -0.47
HOXA1P49639 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.13□□□□□ -0.47
HOXA1P49639 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HOXA1P49639 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HOXA1P49639 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC12.13□□□□□ -0.47
HOXA1P49639 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms