Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC16.88■□□□□ 0.29
BRCA1P38398 ABCD1P3-201ENST00000562927 605 ntBASIC16.88■□□□□ 0.29
BRCA1P38398 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC16.88■□□□□ 0.29
BRCA1P38398 AL078624.1-201ENST00000604004 547 ntBASIC16.88■□□□□ 0.29
BRCA1P38398 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
BRCA1P38398 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 AIRN-201ENST00000601203 4374 ntBASIC16.87■□□□□ 0.29
BRCA1P38398 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 RNF7-205ENST00000480908 782 ntTSL 4 BASIC16.87■□□□□ 0.29
BRCA1P38398 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC16.87■□□□□ 0.29
BRCA1P38398 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
BRCA1P38398 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.87■□□□□ 0.29
BRCA1P38398 AC089987.1-201ENST00000551654 2209 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 U3.41-201ENST00000408711 219 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 SDCBP2P1-201ENST00000416115 614 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC16.86■□□□□ 0.29
BRCA1P38398 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 YBX1P3-201ENST00000468366 909 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC16.86■□□□□ 0.29
BRCA1P38398 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC16.86■□□□□ 0.29
BRCA1P38398 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 AC010503.4-201ENST00000615487 688 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 SIGLEC20P-201ENST00000595243 1311 ntBASIC16.86■□□□□ 0.29
BRCA1P38398 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
BRCA1P38398 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 RBM14-205ENST00000443702 732 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC16.86■□□□□ 0.29
BRCA1P38398 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
BRCA1P38398 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC16.86■□□□□ 0.29
BRCA1P38398 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
BRCA1P38398 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
BRCA1P38398 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 AL022313.4-201ENST00000562756 2046 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.85■□□□□ 0.29
BRCA1P38398 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 DUX4L31-201ENST00000446466 1136 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 GYG1-209ENST00000483267 801 ntTSL 2 BASIC16.85■□□□□ 0.29
BRCA1P38398 AC099343.1-201ENST00000513481 609 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 AC009812.1-201ENST00000605948 1059 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
BRCA1P38398 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.85■□□□□ 0.29
BRCA1P38398 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.85■□□□□ 0.29
BRCA1P38398 AL590824.1-201ENST00000403828 1349 ntBASIC16.85■□□□□ 0.29
BRCA1P38398 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BRCA1P38398 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms