Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 AC074138.1-201ENST00000611182 1303 ntBASIC16.82■□□□□ 0.28
ERCC3P19447 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC3P19447 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC3P19447 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC3P19447 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC3P19447 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 RPSAP31-201ENST00000416648 895 ntBASIC16.82■□□□□ 0.28
ERCC3P19447 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC16.82■□□□□ 0.28
ERCC3P19447 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC16.82■□□□□ 0.28
ERCC3P19447 AC138894.2-201ENST00000602838 371 ntBASIC16.82■□□□□ 0.28
ERCC3P19447 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 YRDCP1-201ENST00000621419 643 ntBASIC16.82■□□□□ 0.28
ERCC3P19447 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.82■□□□□ 0.28
ERCC3P19447 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
ERCC3P19447 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.82■□□□□ 0.28
ERCC3P19447 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ERCC3P19447 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ERCC3P19447 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.81■□□□□ 0.28
ERCC3P19447 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.81■□□□□ 0.28
ERCC3P19447 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.81■□□□□ 0.28
ERCC3P19447 KRT18P36-201ENST00000411618 1276 ntBASIC16.81■□□□□ 0.28
ERCC3P19447 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 DNAJB1P1-201ENST00000429417 1024 ntBASIC16.81■□□□□ 0.28
ERCC3P19447 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 PHBP15-201ENST00000574228 665 ntBASIC16.81■□□□□ 0.28
ERCC3P19447 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.81■□□□□ 0.28
ERCC3P19447 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.81■□□□□ 0.28
ERCC3P19447 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
ERCC3P19447 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.81■□□□□ 0.28
ERCC3P19447 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ERCC3P19447 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.81■□□□□ 0.28
ERCC3P19447 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.8■□□□□ 0.28
ERCC3P19447 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 MTHFR-210ENST00000641407 2387 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ERCC3P19447 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 AP000356.3-201ENST00000382243 753 ntBASIC16.8■□□□□ 0.28
ERCC3P19447 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.8■□□□□ 0.28
ERCC3P19447 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ERCC3P19447 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.8■□□□□ 0.28
ERCC3P19447 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ERCC3P19447 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms