Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL6A3P12111 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
COL6A3P12111 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL6A3P12111 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.46□□□□□ -0.1
COL6A3P12111 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 OR2W2P-201ENST00000406313 909 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 ACTBP14-201ENST00000411655 1089 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 PGK1P2-201ENST00000431702 1214 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 BX284656.1-201ENST00000446364 668 ntTSL 3 BASIC14.45□□□□□ -0.1
COL6A3P12111 AL031773.1-201ENST00000453579 554 ntTSL 3 BASIC14.45□□□□□ -0.1
COL6A3P12111 AC079944.2-201ENST00000478867 734 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 AC112702.1-201ENST00000623712 366 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 CALU-202ENST00000449187 2438 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
COL6A3P12111 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 OAZ3-202ENST00000400999 890 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 HNRNPA1P3-201ENST00000440968 551 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC14.45□□□□□ -0.1
COL6A3P12111 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 AL357137.1-201ENST00000604645 203 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 AC147067.2-201ENST00000608161 289 ntBASIC14.45□□□□□ -0.1
COL6A3P12111 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 LMX1A-203ENST00000367893 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL6A3P12111 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL6A3P12111 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.45□□□□□ -0.1
COL6A3P12111 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 DNM1P17-201ENST00000512082 426 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 DHRS4L1-201ENST00000558293 855 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 BIN3-212ENST00000640731 450 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 AC034205.3-201ENST00000603595 1376 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 PTN-202ENST00000393083 1599 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 MTA3-204ENST00000406911 2041 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 NDFIP2-AS1-201ENST00000457171 431 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC14.44□□□□□ -0.1
COL6A3P12111 OR52P2P-201ENST00000527287 955 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 AL591471.1-201ENST00000621855 229 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC14.44□□□□□ -0.1
COL6A3P12111 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 TBC1D27-202ENST00000424239 1573 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 C12orf45-201ENST00000280749 459 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 GSTK1-201ENST00000358406 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL6A3P12111 RPL5P21-201ENST00000404620 815 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 C3orf18-202ENST00000422619 551 ntTSL 4 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC013269.2-201ENST00000422631 727 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC140481.2-201ENST00000457169 695 ntTSL 2 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC012100.1-201ENST00000470304 282 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.44□□□□□ -0.1
COL6A3P12111 AC026120.2-201ENST00000617239 309 ntBASIC14.44□□□□□ -0.1
COL6A3P12111 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms