Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.59■□□□□ 0.09
CHRNA1P02708 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 AC113935.1-201ENST00000471722 555 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 RN7SL564P-201ENST00000496309 250 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 RNA5SP406-201ENST00000516106 112 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.59■□□□□ 0.09
CHRNA1P02708 C2orf69P1-201ENST00000563532 1093 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.59■□□□□ 0.09
CHRNA1P02708 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC15.59■□□□□ 0.09
CHRNA1P02708 LINC00244-201ENST00000625073 613 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC15.59■□□□□ 0.09
CHRNA1P02708 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.59■□□□□ 0.09
CHRNA1P02708 AC025183.3-201ENST00000623526 1482 ntBASIC15.59■□□□□ 0.09
CHRNA1P02708 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CHRNA1P02708 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.58■□□□□ 0.09
CHRNA1P02708 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.58■□□□□ 0.09
CHRNA1P02708 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHRNA1P02708 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 STK16-203ENST00000409516 895 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CHRNA1P02708 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC15.58■□□□□ 0.08
CHRNA1P02708 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.58■□□□□ 0.08
CHRNA1P02708 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 AC141586.1-203ENST00000567242 366 ntBASIC15.58■□□□□ 0.08
CHRNA1P02708 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC15.58■□□□□ 0.08
CHRNA1P02708 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.58■□□□□ 0.08
CHRNA1P02708 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHRNA1P02708 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC15.58■□□□□ 0.08
CHRNA1P02708 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
CHRNA1P02708 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.57■□□□□ 0.08
CHRNA1P02708 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CHRNA1P02708 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC15.57■□□□□ 0.08
CHRNA1P02708 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CHRNA1P02708 RN7SL788P-201ENST00000460504 316 ntBASIC15.57■□□□□ 0.08
CHRNA1P02708 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CHRNA1P02708 RN7SL396P-201ENST00000471086 295 ntBASIC15.57■□□□□ 0.08
CHRNA1P02708 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 REEP5-205ENST00000504247 480 ntTSL 5 BASIC15.57■□□□□ 0.08
CHRNA1P02708 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC15.57■□□□□ 0.08
CHRNA1P02708 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.57■□□□□ 0.08
CHRNA1P02708 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.57■□□□□ 0.08
CHRNA1P02708 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC15.57■□□□□ 0.08
CHRNA1P02708 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHRNA1P02708 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms