Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 AL008718.2-201ENST00000609206 1313 ntBASIC15.24■□□□□ 0.03
APOEP02649 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.24■□□□□ 0.03
APOEP02649 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.24■□□□□ 0.03
APOEP02649 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.24■□□□□ 0.03
APOEP02649 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.24■□□□□ 0.03
APOEP02649 AC004898.1-201ENST00000451057 766 ntBASIC15.24■□□□□ 0.03
APOEP02649 RNMTL1P1-201ENST00000454103 560 ntBASIC15.24■□□□□ 0.03
APOEP02649 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
APOEP02649 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
APOEP02649 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
APOEP02649 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
APOEP02649 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 AGGF1P1-201ENST00000509500 2073 ntBASIC15.23■□□□□ 0.03
APOEP02649 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
APOEP02649 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.23■□□□□ 0.03
APOEP02649 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.23■□□□□ 0.03
APOEP02649 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 AC106794.1-201ENST00000506935 792 ntBASIC15.23■□□□□ 0.03
APOEP02649 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 AP001258.2-201ENST00000529891 490 ntBASIC15.23■□□□□ 0.03
APOEP02649 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.23■□□□□ 0.03
APOEP02649 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
APOEP02649 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.23■□□□□ 0.03
APOEP02649 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.23■□□□□ 0.03
APOEP02649 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
APOEP02649 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.22■□□□□ 0.03
APOEP02649 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 AC018735.1-201ENST00000437208 1502 ntBASIC15.22■□□□□ 0.03
APOEP02649 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.22■□□□□ 0.03
APOEP02649 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
APOEP02649 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms