Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RHBDD3Q9Y3P4 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
RHBDD3Q9Y3P4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC005229.1-201ENST00000392885 409 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AL512384.1-201ENST00000406683 331 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 BCRP2-202ENST00000447763 634 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 FTLP10-202ENST00000505798 471 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 BCRP6-201ENST00000510112 632 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 BCRP7-201ENST00000511549 544 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC132938.2-201ENST00000579188 680 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC015936.2-201ENST00000593177 259 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AC132938.4-201ENST00000623835 848 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 AL591163.1-201ENST00000641757 987 ntBASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
RHBDD3Q9Y3P4 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 AC090643.2-201ENST00000623442 2029 ntBASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
RHBDD3Q9Y3P4 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms