Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MKS1Q9NXB0 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.31□□□□□ -0.12
MKS1Q9NXB0 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 CHCHD2P3-201ENST00000603038 451 ntBASIC14.31□□□□□ -0.12
MKS1Q9NXB0 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.31□□□□□ -0.12
MKS1Q9NXB0 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 AC019294.4-201ENST00000561777 2905 ntBASIC14.31□□□□□ -0.12
MKS1Q9NXB0 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.31□□□□□ -0.12
MKS1Q9NXB0 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 DLX4-206ENST00000611342 1662 ntBASIC14.3□□□□□ -0.12
MKS1Q9NXB0 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 BAATP1-201ENST00000412284 1225 ntBASIC14.3□□□□□ -0.12
MKS1Q9NXB0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AL132655.2-201ENST00000596276 594 ntBASIC14.3□□□□□ -0.12
MKS1Q9NXB0 WFDC1-204ENST00000613603 549 ntBASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AC027601.3-201ENST00000622907 509 ntBASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MKS1Q9NXB0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms