Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 KLF2P1-201ENST00000447438 1042 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 HIST2H2BC-201ENST00000498492 580 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AC136759.1-202ENST00000530858 2194 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AC097359.2-201ENST00000604992 2389 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC015688.4-201ENST00000580780 1647 ntBASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC087386.2-201ENST00000623212 4637 ntBASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC215219.1-201ENST00000400706 1817 ntBASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC103988.2-201ENST00000561804 725 ntBASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 AC027601.5-201ENST00000624065 2482 ntBASIC17.36■□□□□ 0.37
CHMP4CQ96CF2 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 AC104073.2-201ENST00000453737 312 ntBASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHMP4CQ96CF2 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms