Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CLHC1Q8NHS4 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14□□□□□ -0.17
CLHC1Q8NHS4 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AGAP10P-201ENST00000454844 2418 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AC105206.1-202ENST00000314927 2368 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 RN7SL752P-201ENST00000463779 287 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AC025279.2-201ENST00000569730 653 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CICP20-201ENST00000443330 2801 ntBASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CLHC1Q8NHS4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 KRT8P28-201ENST00000433288 1390 ntBASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms