Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 SCARNA20.5-201ENST00000516991 142 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ACTG1P17-201ENST00000558391 1119 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AC068587.8-201ENST00000641239 219 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 AL133338.1-201ENST00000565695 1517 ntBASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFWD3Q6PCD5 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC138028.6-201ENST00000616106 1482 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 KRT8P28-201ENST00000433288 1390 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC113367.3-201ENST00000508316 1912 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC027612.1-201ENST00000445234 2395 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC016700.1-201ENST00000429424 312 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AL157407.1-201ENST00000435784 904 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 FAM58BP-201ENST00000439056 645 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AL645933.1-201ENST00000440087 609 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC012441.2-201ENST00000444843 739 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 BX284668.4-201ENST00000453917 508 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC106794.1-201ENST00000506935 792 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC103988.2-201ENST00000561804 725 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 RN7SL163P-201ENST00000583100 276 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AC138649.2-201ENST00000615886 705 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 AL354702.1-201ENST00000442006 1960 ntBASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFWD3Q6PCD5 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFWD3Q6PCD5 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms