Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 OLA1P2-201ENST00000395519 1264 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 RN7SL351P-201ENST00000469306 248 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AL357143.1-203ENST00000639750 881 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AC007952.5-201ENST00000572818 1486 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 HLA-DMA-202ENST00000395303 1007 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AL359091.4-201ENST00000610052 409 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 AL390755.1-201ENST00000623716 2027 ntBASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC88AQ3V6T2 KRT8P43-201ENST00000406052 1458 ntBASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 WASH7P-201ENST00000488147 1351 ntBASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC120498.7-201ENST00000562876 330 ntBASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CES1P2-201ENST00000566467 1242 ntBASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC091769.1-201ENST00000619576 568 ntBASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC88AQ3V6T2 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 MIR4746-201ENST00000579802 71 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 AC138761.6-201ENST00000583997 1423 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 AC011498.7-201ENST00000624986 2027 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 TNRC18P2-201ENST00000417666 2714 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms