Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.9□□□□□ -0.18
MSX2P35548 EIF3FP3-201ENST00000434851 1086 ntBASIC13.9□□□□□ -0.18
MSX2P35548 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 SORD2P-201ENST00000558556 1069 ntBASIC13.9□□□□□ -0.18
MSX2P35548 AC103988.2-201ENST00000561804 725 ntBASIC13.9□□□□□ -0.18
MSX2P35548 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.9□□□□□ -0.18
MSX2P35548 SPDYE22P-201ENST00000582158 798 ntBASIC13.9□□□□□ -0.18
MSX2P35548 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 AC139712.1-201ENST00000378256 1875 ntBASIC13.9□□□□□ -0.18
MSX2P35548 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.9□□□□□ -0.18
MSX2P35548 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.9□□□□□ -0.18
MSX2P35548 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
MSX2P35548 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
MSX2P35548 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
MSX2P35548 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 AL445250.1-201ENST00000641671 2259 ntBASIC13.89□□□□□ -0.19
MSX2P35548 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 AP000437.1-201ENST00000624057 2085 ntBASIC13.89□□□□□ -0.19
MSX2P35548 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 TLE1P1-201ENST00000422965 589 ntBASIC13.89□□□□□ -0.19
MSX2P35548 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC13.89□□□□□ -0.19
MSX2P35548 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 NUS1P3-201ENST00000423502 862 ntBASIC13.89□□□□□ -0.19
MSX2P35548 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.89□□□□□ -0.19
MSX2P35548 AC114501.2-201ENST00000439631 535 ntBASIC13.89□□□□□ -0.19
MSX2P35548 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.89□□□□□ -0.19
MSX2P35548 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC13.89□□□□□ -0.19
MSX2P35548 AC004623.1-201ENST00000624592 2127 ntBASIC13.89□□□□□ -0.19
MSX2P35548 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.89□□□□□ -0.19
MSX2P35548 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.89□□□□□ -0.19
MSX2P35548 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX2P35548 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX2P35548 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX2P35548 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
MSX2P35548 AC138969.2-201ENST00000532739 9932 ntBASIC13.88□□□□□ -0.19
MSX2P35548 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms