Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
SCN4AP35499 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC16.52■□□□□ 0.23
SCN4AP35499 IGHVII-74-1-201ENST00000517572 241 ntBASIC16.52■□□□□ 0.23
SCN4AP35499 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC16.52■□□□□ 0.23
SCN4AP35499 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC16.52■□□□□ 0.23
SCN4AP35499 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC16.52■□□□□ 0.23
SCN4AP35499 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SCN4AP35499 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC16.52■□□□□ 0.23
SCN4AP35499 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SCN4AP35499 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.52■□□□□ 0.23
SCN4AP35499 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.51■□□□□ 0.23
SCN4AP35499 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.51■□□□□ 0.23
SCN4AP35499 RN7SL69P-201ENST00000468423 272 ntBASIC16.51■□□□□ 0.23
SCN4AP35499 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC16.51■□□□□ 0.23
SCN4AP35499 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC16.51■□□□□ 0.23
SCN4AP35499 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC16.51■□□□□ 0.23
SCN4AP35499 MIR4640-201ENST00000581824 90 ntBASIC16.51■□□□□ 0.23
SCN4AP35499 AL031768.1-201ENST00000606542 701 ntBASIC16.51■□□□□ 0.23
SCN4AP35499 AP006248.1-201ENST00000610471 67 ntBASIC16.51■□□□□ 0.23
SCN4AP35499 AC010503.4-201ENST00000615487 688 ntBASIC16.51■□□□□ 0.23
SCN4AP35499 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SCN4AP35499 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SCN4AP35499 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.51■□□□□ 0.23
SCN4AP35499 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 CRIP1P2-201ENST00000425396 228 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.5■□□□□ 0.23
SCN4AP35499 AL161727.1-201ENST00000457409 530 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 KRT18P15-201ENST00000458108 1291 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 GYG1-209ENST00000483267 801 ntTSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 ALDOAP1-201ENST00000491506 1078 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC16.5■□□□□ 0.23
SCN4AP35499 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC16.5■□□□□ 0.23
SCN4AP35499 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 AL596257.1-201ENST00000641463 2694 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 AL354702.1-201ENST00000442006 1960 ntBASIC16.5■□□□□ 0.23
SCN4AP35499 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SCN4AP35499 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.5■□□□□ 0.23
SCN4AP35499 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.5■□□□□ 0.23
SCN4AP35499 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC16.49■□□□□ 0.23
SCN4AP35499 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.49■□□□□ 0.23
SCN4AP35499 AC041040.1-201ENST00000425197 460 ntBASIC16.49■□□□□ 0.23
SCN4AP35499 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms