Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HILS1-202ENST00000545329 423 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 NOP2-220ENST00000545915 630 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 RAB43P1-201ENST00000561790 589 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC010319.3-201ENST00000597028 470 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC138696.2-201ENST00000607376 223 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 AL162274.1-201ENST00000617191 1098 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 LINC02486-201ENST00000604157 3000 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC105206.1-202ENST00000314927 2368 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 FKBP4P6-201ENST00000457486 1332 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 MGST3-203ENST00000367885 680 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 PGF-202ENST00000405431 666 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 ARSEP1-201ENST00000420443 635 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC245100.3-201ENST00000441281 285 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 FUZ-207ENST00000526575 482 ntTSL 4 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC103988.2-201ENST00000561804 725 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC015936.2-201ENST00000593177 259 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 AC017083.2-201ENST00000608069 979 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 ABBA01031660.1-201ENST00000635219 756 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 TCAM1P-207ENST00000485295 1537 ntBASIC11.13□□□□□ -0.63
HLA-DMBP28068 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC11.13□□□□□ -0.63
HLA-DMBP28068 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
HLA-DMBP28068 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DMBP28068 AL157996.1-201ENST00000624684 2299 ntBASIC11.12□□□□□ -0.63
HLA-DMBP28068 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms