Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.35□□□□□ -0.11
CDH3P22223 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH3P22223 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
CDH3P22223 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CDH3P22223 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.35□□□□□ -0.11
CDH3P22223 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.35□□□□□ -0.11
CDH3P22223 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CDH3P22223 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDH3P22223 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CDH3P22223 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.34□□□□□ -0.11
CDH3P22223 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 MIR663B-201ENST00000408361 115 ntBASIC14.34□□□□□ -0.11
CDH3P22223 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 AC006033.1-201ENST00000440505 426 ntBASIC14.34□□□□□ -0.11
CDH3P22223 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.34□□□□□ -0.11
CDH3P22223 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.34□□□□□ -0.11
CDH3P22223 AC099548.2-209ENST00000480264 625 ntBASIC14.34□□□□□ -0.11
CDH3P22223 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CDH3P22223 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.34□□□□□ -0.11
CDH3P22223 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 HSPA7-201ENST00000445535 1927 ntBASIC14.34□□□□□ -0.11
CDH3P22223 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
CDH3P22223 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CDH3P22223 AC020907.1-201ENST00000616460 1350 ntBASIC14.34□□□□□ -0.11
CDH3P22223 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.34□□□□□ -0.11
CDH3P22223 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
CDH3P22223 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH3P22223 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
CDH3P22223 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.11
CDH3P22223 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CDH3P22223 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CDH3P22223 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CDH3P22223 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.33□□□□□ -0.11
CDH3P22223 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.33□□□□□ -0.11
CDH3P22223 PPT1-213ENST00000641319 2388 ntBASIC14.33□□□□□ -0.11
CDH3P22223 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CDH3P22223 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CDH3P22223 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.33□□□□□ -0.11
CDH3P22223 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.33□□□□□ -0.12
CDH3P22223 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH3P22223 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH3P22223 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CDH3P22223 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CDH3P22223 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CDH3P22223 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH3P22223 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.33□□□□□ -0.12
CDH3P22223 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms