Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL050341.2-201ENST00000567508 1541 ntBASIC14.81□□□□□ -0.04
COL9A1P20849 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.81□□□□□ -0.04
COL9A1P20849 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL9A1P20849 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
COL9A1P20849 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL9A1P20849 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 CRYGB-201ENST00000260988 641 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 MIR1226-201ENST00000408658 75 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 KRT18P36-201ENST00000411618 1276 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 AL773545.2-201ENST00000442149 472 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
COL9A1P20849 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 MBP-230ENST00000528160 584 ntTSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.8□□□□□ -0.04
COL9A1P20849 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.8□□□□□ -0.04
COL9A1P20849 AC087072.1-201ENST00000603727 421 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 BNIP3P35-201ENST00000604530 490 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 SUGT1P3-205ENST00000633814 572 ntTSL 3 BASIC14.8□□□□□ -0.04
COL9A1P20849 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
COL9A1P20849 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 CICP23-201ENST00000605013 2741 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.8□□□□□ -0.04
COL9A1P20849 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.8□□□□□ -0.04
COL9A1P20849 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 LINC01101-201ENST00000622953 1884 ntBASIC14.8□□□□□ -0.04
COL9A1P20849 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL9A1P20849 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 NQO2-204ENST00000380454 851 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 AL627095.1-201ENST00000414775 321 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 AL512599.1-201ENST00000430724 685 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 AC093106.1-201ENST00000437271 352 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 RPL4P6-201ENST00000438116 1304 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 AC098934.1-203ENST00000442868 1262 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 AC012454.1-201ENST00000443948 995 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC14.79□□□□□ -0.04
COL9A1P20849 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 AC021546.1-201ENST00000518927 1031 ntTSL 3 BASIC14.79□□□□□ -0.04
COL9A1P20849 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
COL9A1P20849 OR5BD1P-201ENST00000532527 817 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC14.79□□□□□ -0.04
COL9A1P20849 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC14.79□□□□□ -0.04
COL9A1P20849 AC120498.7-201ENST00000562876 330 ntBASIC14.79□□□□□ -0.04
COL9A1P20849 MTND1P8-201ENST00000571424 950 ntBASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms