Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 AC244394.1-201ENST00000435000 1665 ntBASIC15.26■□□□□ 0.03
APOEP02649 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
APOEP02649 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.26■□□□□ 0.03
APOEP02649 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 AC006033.1-201ENST00000440505 426 ntBASIC15.26■□□□□ 0.03
APOEP02649 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.26■□□□□ 0.03
APOEP02649 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
APOEP02649 AC103988.2-201ENST00000561804 725 ntBASIC15.26■□□□□ 0.03
APOEP02649 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
APOEP02649 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
APOEP02649 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
APOEP02649 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.25■□□□□ 0.03
APOEP02649 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 AC126915.1-201ENST00000522847 1038 ntBASIC15.25■□□□□ 0.03
APOEP02649 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.25■□□□□ 0.03
APOEP02649 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.25■□□□□ 0.03
APOEP02649 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 MIR4525-201ENST00000580000 75 ntBASIC15.25■□□□□ 0.03
APOEP02649 MIR4783-201ENST00000580343 82 ntBASIC15.25■□□□□ 0.03
APOEP02649 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.25■□□□□ 0.03
APOEP02649 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.25■□□□□ 0.03
APOEP02649 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
APOEP02649 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
APOEP02649 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
APOEP02649 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
APOEP02649 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
APOEP02649 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
APOEP02649 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.24■□□□□ 0.03
APOEP02649 KRT8P28-201ENST00000433288 1390 ntBASIC15.24■□□□□ 0.03
APOEP02649 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
APOEP02649 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
APOEP02649 KHSRPP1-201ENST00000427983 1768 ntBASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms