Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
LDB3O75112 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
LDB3O75112 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.67□□□□□ -0.22
LDB3O75112 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 HSPA7-201ENST00000445535 1927 ntBASIC13.66□□□□□ -0.22
LDB3O75112 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 VDAC1P1-201ENST00000439229 848 ntBASIC13.66□□□□□ -0.22
LDB3O75112 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.66□□□□□ -0.22
LDB3O75112 AC104073.2-201ENST00000453737 312 ntBASIC13.66□□□□□ -0.22
LDB3O75112 SERPINA13P-202ENST00000478994 924 ntBASIC13.66□□□□□ -0.22
LDB3O75112 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.66□□□□□ -0.22
LDB3O75112 AC126915.1-201ENST00000522847 1038 ntBASIC13.66□□□□□ -0.22
LDB3O75112 AC243960.2-201ENST00000600996 747 ntBASIC13.66□□□□□ -0.22
LDB3O75112 AL022328.3-201ENST00000607943 679 ntBASIC13.66□□□□□ -0.22
LDB3O75112 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC13.66□□□□□ -0.22
LDB3O75112 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC13.66□□□□□ -0.22
LDB3O75112 MIR6869-201ENST00000619434 62 ntBASIC13.66□□□□□ -0.22
LDB3O75112 AC004923.1-202ENST00000642106 209 ntBASIC13.66□□□□□ -0.22
LDB3O75112 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
LDB3O75112 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
LDB3O75112 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
LDB3O75112 AC064801.2-201ENST00000625052 1303 ntBASIC13.65□□□□□ -0.22
LDB3O75112 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LDB3O75112 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
LDB3O75112 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
LDB3O75112 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.65□□□□□ -0.22
LDB3O75112 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LDB3O75112 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
LDB3O75112 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.65□□□□□ -0.22
LDB3O75112 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.65□□□□□ -0.22
LDB3O75112 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
LDB3O75112 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms