Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 SLC47A1P1-202ENST00000449666 945 ntBASIC20.61■□□□□ 0.89
SHANK1Q9Y566 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SHANK1Q9Y566 AC241377.3-202ENST00000626088 1088 ntBASIC20.61■□□□□ 0.89
SHANK1Q9Y566 AC241585.3-202ENST00000628937 1088 ntBASIC20.61■□□□□ 0.89
SHANK1Q9Y566 AC245100.8-202ENST00000629247 1058 ntBASIC20.61■□□□□ 0.89
SHANK1Q9Y566 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.6■□□□□ 0.89
SHANK1Q9Y566 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.6■□□□□ 0.89
SHANK1Q9Y566 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK1Q9Y566 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SHANK1Q9Y566 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK1Q9Y566 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.58■□□□□ 0.89
SHANK1Q9Y566 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 AC092803.2-201ENST00000564287 1899 ntBASIC20.58■□□□□ 0.88
SHANK1Q9Y566 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 YBX1P1-201ENST00000445822 960 ntBASIC20.58■□□□□ 0.88
SHANK1Q9Y566 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK1Q9Y566 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.57■□□□□ 0.88
SHANK1Q9Y566 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.56■□□□□ 0.88
SHANK1Q9Y566 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHANK1Q9Y566 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 AC010501.1-201ENST00000606270 1962 ntBASIC20.55■□□□□ 0.88
SHANK1Q9Y566 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHANK1Q9Y566 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SHANK1Q9Y566 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms