Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TIMP4Q99727 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
TIMP4Q99727 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
TIMP4Q99727 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TIMP4Q99727 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.83■□□□□ 0.93
TIMP4Q99727 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TIMP4Q99727 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TIMP4Q99727 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.83■□□□□ 0.92
TIMP4Q99727 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.83■□□□□ 0.92
TIMP4Q99727 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TIMP4Q99727 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.82■□□□□ 0.92
TIMP4Q99727 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.82■□□□□ 0.92
TIMP4Q99727 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.82■□□□□ 0.92
TIMP4Q99727 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.81■□□□□ 0.92
TIMP4Q99727 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.81■□□□□ 0.92
TIMP4Q99727 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.81■□□□□ 0.92
TIMP4Q99727 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TIMP4Q99727 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.81■□□□□ 0.92
TIMP4Q99727 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TIMP4Q99727 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TIMP4Q99727 AC004448.1-201ENST00000458332 883 ntBASIC20.81■□□□□ 0.92
TIMP4Q99727 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.81■□□□□ 0.92
TIMP4Q99727 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP4Q99727 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP4Q99727 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP4Q99727 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP4Q99727 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP4Q99727 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.8■□□□□ 0.92
TIMP4Q99727 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.8■□□□□ 0.92
TIMP4Q99727 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.8■□□□□ 0.92
TIMP4Q99727 AC131281.2-201ENST00000520478 145 ntBASIC20.8■□□□□ 0.92
TIMP4Q99727 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
TIMP4Q99727 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TIMP4Q99727 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TIMP4Q99727 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TIMP4Q99727 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP4Q99727 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP4Q99727 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP4Q99727 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.79■□□□□ 0.92
TIMP4Q99727 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.79■□□□□ 0.92
TIMP4Q99727 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TIMP4Q99727 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.79■□□□□ 0.92
TIMP4Q99727 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.79■□□□□ 0.92
TIMP4Q99727 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TIMP4Q99727 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TIMP4Q99727 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.78■□□□□ 0.92
TIMP4Q99727 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TIMP4Q99727 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP4Q99727 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.77■□□□□ 0.92
TIMP4Q99727 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP4Q99727 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.77■□□□□ 0.92
TIMP4Q99727 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.77■□□□□ 0.92
TIMP4Q99727 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.77■□□□□ 0.92
TIMP4Q99727 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.77■□□□□ 0.92
TIMP4Q99727 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP4Q99727 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TIMP4Q99727 HLA-L-211ENST00000482052 1765 ntBASIC20.77■□□□□ 0.91
TIMP4Q99727 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.76■□□□□ 0.91
TIMP4Q99727 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.76■□□□□ 0.91
TIMP4Q99727 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TIMP4Q99727 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TIMP4Q99727 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
TIMP4Q99727 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TIMP4Q99727 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP4Q99727 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.75■□□□□ 0.91
TIMP4Q99727 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
TIMP4Q99727 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP4Q99727 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TIMP4Q99727 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TIMP4Q99727 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 AC131274.2-201ENST00000580697 1507 ntBASIC20.74■□□□□ 0.91
TIMP4Q99727 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 C9orf163-202ENST00000624034 2573 ntBASIC20.74■□□□□ 0.91
TIMP4Q99727 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.74■□□□□ 0.91
TIMP4Q99727 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TIMP4Q99727 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.74■□□□□ 0.91
TIMP4Q99727 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.74■□□□□ 0.91
TIMP4Q99727 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
TIMP4Q99727 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TIMP4Q99727 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.74■□□□□ 0.91
TIMP4Q99727 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.74■□□□□ 0.91
TIMP4Q99727 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TIMP4Q99727 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TIMP4Q99727 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TIMP4Q99727 AL136116.3-201ENST00000402907 1138 ntBASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms