Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP47Q96K76 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP47Q96K76 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP47Q96K76 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
USP47Q96K76 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC31.98■■■□□ 2.71
USP47Q96K76 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
USP47Q96K76 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC31.97■■■□□ 2.71
USP47Q96K76 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP47Q96K76 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP47Q96K76 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
USP47Q96K76 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
USP47Q96K76 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
USP47Q96K76 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.96■■■□□ 2.71
USP47Q96K76 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.96■■■□□ 2.71
USP47Q96K76 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
USP47Q96K76 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC31.95■■■□□ 2.71
USP47Q96K76 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
USP47Q96K76 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP47Q96K76 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
USP47Q96K76 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
USP47Q96K76 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC31.95■■■□□ 2.7
USP47Q96K76 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC31.94■■■□□ 2.7
USP47Q96K76 AC009102.2-201ENST00000606772 1639 ntBASIC31.94■■■□□ 2.7
USP47Q96K76 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
USP47Q96K76 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC31.94■■■□□ 2.7
USP47Q96K76 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
USP47Q96K76 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.94■■■□□ 2.7
USP47Q96K76 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC31.94■■■□□ 2.7
USP47Q96K76 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
USP47Q96K76 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC31.93■■■□□ 2.7
USP47Q96K76 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
USP47Q96K76 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC31.92■■■□□ 2.7
USP47Q96K76 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
USP47Q96K76 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC31.92■■■□□ 2.7
USP47Q96K76 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
USP47Q96K76 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC31.92■■■□□ 2.7
USP47Q96K76 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
USP47Q96K76 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.92■■■□□ 2.7
USP47Q96K76 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC31.91■■■□□ 2.7
USP47Q96K76 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC31.91■■■□□ 2.7
USP47Q96K76 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
USP47Q96K76 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC31.91■■■□□ 2.7
USP47Q96K76 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
USP47Q96K76 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.91■■■□□ 2.7
USP47Q96K76 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP47Q96K76 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP47Q96K76 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP47Q96K76 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
USP47Q96K76 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
USP47Q96K76 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
USP47Q96K76 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC31.9■■■□□ 2.7
USP47Q96K76 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC31.9■■■□□ 2.7
USP47Q96K76 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP47Q96K76 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
USP47Q96K76 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP47Q96K76 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP47Q96K76 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.89■■■□□ 2.7
USP47Q96K76 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
USP47Q96K76 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
USP47Q96K76 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC31.88■■■□□ 2.69
USP47Q96K76 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC31.88■■■□□ 2.69
USP47Q96K76 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC31.88■■■□□ 2.69
USP47Q96K76 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USP47Q96K76 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC31.88■■■□□ 2.69
USP47Q96K76 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
USP47Q96K76 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
USP47Q96K76 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
USP47Q96K76 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 C17orf82-201ENST00000623772 1530 ntBASIC31.87■■■□□ 2.69
USP47Q96K76 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
USP47Q96K76 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
USP47Q96K76 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
USP47Q96K76 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP47Q96K76 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP47Q96K76 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC31.85■■■□□ 2.69
USP47Q96K76 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP47Q96K76 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
USP47Q96K76 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
USP47Q96K76 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.85■■■□□ 2.69
USP47Q96K76 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
USP47Q96K76 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC31.84■■■□□ 2.69
USP47Q96K76 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP47Q96K76 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
USP47Q96K76 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
USP47Q96K76 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP47Q96K76 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
USP47Q96K76 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
USP47Q96K76 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
USP47Q96K76 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms