Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
TTC28Q96AY4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
TTC28Q96AY4 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
TTC28Q96AY4 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TTC28Q96AY4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
TTC28Q96AY4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.59■■□□□ 1.37
TTC28Q96AY4 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TTC28Q96AY4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TTC28Q96AY4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC23.58■■□□□ 1.37
TTC28Q96AY4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.58■■□□□ 1.37
TTC28Q96AY4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.58■■□□□ 1.37
TTC28Q96AY4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TTC28Q96AY4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TTC28Q96AY4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.58■■□□□ 1.37
TTC28Q96AY4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.58■■□□□ 1.37
TTC28Q96AY4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
TTC28Q96AY4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.58■■□□□ 1.36
TTC28Q96AY4 MIR1224-201ENST00000408193 85 ntBASIC23.57■■□□□ 1.36
TTC28Q96AY4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC23.57■■□□□ 1.36
TTC28Q96AY4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TTC28Q96AY4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
TTC28Q96AY4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.57■■□□□ 1.36
TTC28Q96AY4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.57■■□□□ 1.36
TTC28Q96AY4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TTC28Q96AY4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
TTC28Q96AY4 AL050303.2-201ENST00000619798 666 ntBASIC23.56■■□□□ 1.36
TTC28Q96AY4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TTC28Q96AY4 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
TTC28Q96AY4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.56■■□□□ 1.36
TTC28Q96AY4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TTC28Q96AY4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.56■■□□□ 1.36
TTC28Q96AY4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.56■■□□□ 1.36
TTC28Q96AY4 TPRG1LP1-201ENST00000598702 760 ntBASIC23.56■■□□□ 1.36
TTC28Q96AY4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
TTC28Q96AY4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TTC28Q96AY4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.56■■□□□ 1.36
TTC28Q96AY4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.55■■□□□ 1.36
TTC28Q96AY4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
TTC28Q96AY4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TTC28Q96AY4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
TTC28Q96AY4 AC091060.1-201ENST00000623524 1766 ntBASIC23.55■■□□□ 1.36
TTC28Q96AY4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TTC28Q96AY4 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.55■■□□□ 1.36
TTC28Q96AY4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.54■■□□□ 1.36
TTC28Q96AY4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
TTC28Q96AY4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.54■■□□□ 1.36
TTC28Q96AY4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
TTC28Q96AY4 RPS2P52-201ENST00000469610 820 ntBASIC23.54■■□□□ 1.36
TTC28Q96AY4 MFSD11-216ENST00000590393 1141 ntBASIC23.54■■□□□ 1.36
TTC28Q96AY4 TSPY6P-201ENST00000448518 926 ntBASIC23.53■■□□□ 1.36
TTC28Q96AY4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.53■■□□□ 1.36
TTC28Q96AY4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.53■■□□□ 1.36
TTC28Q96AY4 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.53■■□□□ 1.36
TTC28Q96AY4 GCSHP5-201ENST00000443090 522 ntBASIC23.53■■□□□ 1.36
TTC28Q96AY4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC23.53■■□□□ 1.36
TTC28Q96AY4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.52■■□□□ 1.36
TTC28Q96AY4 AL596275.1-201ENST00000423464 877 ntBASIC23.52■■□□□ 1.36
TTC28Q96AY4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.52■■□□□ 1.36
TTC28Q96AY4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC23.52■■□□□ 1.36
TTC28Q96AY4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
TTC28Q96AY4 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.51■■□□□ 1.35
TTC28Q96AY4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
TTC28Q96AY4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
TTC28Q96AY4 KRT18P29-201ENST00000397031 1267 ntBASIC23.51■■□□□ 1.35
TTC28Q96AY4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.51■■□□□ 1.35
TTC28Q96AY4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.5■■□□□ 1.35
TTC28Q96AY4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
TTC28Q96AY4 AC098590.1-201ENST00000468126 897 ntBASIC23.5■■□□□ 1.35
TTC28Q96AY4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.5■■□□□ 1.35
TTC28Q96AY4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
TTC28Q96AY4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
TTC28Q96AY4 AC098934.4-201ENST00000564127 592 ntBASIC23.5■■□□□ 1.35
TTC28Q96AY4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
TTC28Q96AY4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
TTC28Q96AY4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TTC28Q96AY4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 KRT18P11-201ENST00000435214 1283 ntBASIC23.49■■□□□ 1.35
TTC28Q96AY4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
TTC28Q96AY4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.49■■□□□ 1.35
TTC28Q96AY4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms