Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC31.29■■■□□ 2.6
NPHP3Q7Z494 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC31.29■■■□□ 2.6
NPHP3Q7Z494 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NPHP3Q7Z494 HLA-L-209ENST00000420110 1011 ntBASIC31.29■■■□□ 2.6
NPHP3Q7Z494 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC31.29■■■□□ 2.6
NPHP3Q7Z494 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 ME3-201ENST00000323418 1068 ntTSL 5 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC31.28■■■□□ 2.6
NPHP3Q7Z494 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPHP3Q7Z494 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC31.26■■■□□ 2.6
NPHP3Q7Z494 TERF1P2-201ENST00000583350 1212 ntBASIC31.26■■■□□ 2.6
NPHP3Q7Z494 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NPHP3Q7Z494 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC31.26■■■□□ 2.59
NPHP3Q7Z494 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 KRT18P14-201ENST00000534205 1250 ntBASIC31.25■■■□□ 2.59
NPHP3Q7Z494 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPHP3Q7Z494 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPHP3Q7Z494 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 MIR6089-201ENST00000616698 64 ntBASIC31.23■■■□□ 2.59
NPHP3Q7Z494 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC31.23■■■□□ 2.59
NPHP3Q7Z494 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPHP3Q7Z494 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NPHP3Q7Z494 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NPHP3Q7Z494 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
NPHP3Q7Z494 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC31.2■■■□□ 2.58
NPHP3Q7Z494 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP3Q7Z494 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPHP3Q7Z494 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC31.19■■■□□ 2.58
NPHP3Q7Z494 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC31.19■■■□□ 2.58
NPHP3Q7Z494 LINC02228-203ENST00000641970 1355 ntBASIC31.19■■■□□ 2.58
NPHP3Q7Z494 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPHP3Q7Z494 SHF-206ENST00000560471 2499 ntTSL 5 BASIC31.17■■■□□ 2.58
NPHP3Q7Z494 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC31.17■■■□□ 2.58
NPHP3Q7Z494 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP3Q7Z494 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
NPHP3Q7Z494 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
NPHP3Q7Z494 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
NPHP3Q7Z494 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC31.15■■■□□ 2.58
NPHP3Q7Z494 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP3Q7Z494 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
NPHP3Q7Z494 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NPHP3Q7Z494 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms