Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.15■■■□□ 2.1
CCDC88AQ3V6T2 AC126544.1-201ENST00000580842 1059 ntBASIC28.15■■■□□ 2.1
CCDC88AQ3V6T2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
CCDC88AQ3V6T2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.15■■■□□ 2.1
CCDC88AQ3V6T2 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC28.15■■■□□ 2.1
CCDC88AQ3V6T2 AC009102.2-201ENST00000606772 1639 ntBASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 CEBPA-AS1-201ENST00000592982 2198 ntBASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
CCDC88AQ3V6T2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 MIR6089-201ENST00000616698 64 ntBASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 AC241377.3-202ENST00000626088 1088 ntBASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 AC241585.3-202ENST00000628937 1088 ntBASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 REST-206ENST00000612429 1376 ntTSL 5 BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 REST-207ENST00000616975 1370 ntTSL 5 BASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 AC145676.1-201ENST00000514988 2004 ntBASIC28.13■■■□□ 2.09
CCDC88AQ3V6T2 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.12■■■□□ 2.09
CCDC88AQ3V6T2 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 HLA-L-209ENST00000420110 1011 ntBASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 TSPY26P-201ENST00000476365 1326 ntBASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.11■■■□□ 2.09
CCDC88AQ3V6T2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 AC123595.1-201ENST00000440769 1046 ntBASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
CCDC88AQ3V6T2 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC88AQ3V6T2 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.09■■■□□ 2.09
CCDC88AQ3V6T2 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CCDC88AQ3V6T2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CCDC88AQ3V6T2 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 CCDC92B-201ENST00000575506 885 ntBASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 SLC6A10P-202ENST00000431994 2058 ntBASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC28.07■■■□□ 2.08
CCDC88AQ3V6T2 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC28.06■■■□□ 2.08
CCDC88AQ3V6T2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC88AQ3V6T2 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.05■■■□□ 2.08
CCDC88AQ3V6T2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
CCDC88AQ3V6T2 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.05■■■□□ 2.08
CCDC88AQ3V6T2 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CCDC88AQ3V6T2 AL358852.1-201ENST00000623174 1268 ntBASIC28.05■■■□□ 2.08
CCDC88AQ3V6T2 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.04■■■□□ 2.08
CCDC88AQ3V6T2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC28.03■■■□□ 2.08
CCDC88AQ3V6T2 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.03■■■□□ 2.08
CCDC88AQ3V6T2 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CCDC88AQ3V6T2 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 TK2-208ENST00000545043 1120 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CCDC88AQ3V6T2 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC28.01■■■□□ 2.08
CCDC88AQ3V6T2 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC88AQ3V6T2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC28.01■■■□□ 2.07
CCDC88AQ3V6T2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms