Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
PTCHD3Q3KNS1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PTCHD3Q3KNS1 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.14
PTCHD3Q3KNS1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC22.14■■□□□ 1.14
PTCHD3Q3KNS1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 AC010997.5-201ENST00000609182 354 ntBASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTCHD3Q3KNS1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 MTDHP2-201ENST00000601468 714 ntBASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.13■■□□□ 1.13
PTCHD3Q3KNS1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 AC008406.3-201ENST00000620001 1374 ntBASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 SNX5-217ENST00000606557 1087 ntBASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.12■■□□□ 1.13
PTCHD3Q3KNS1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTCHD3Q3KNS1 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
PTCHD3Q3KNS1 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PTCHD3Q3KNS1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PTCHD3Q3KNS1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.08■■□□□ 1.12
PTCHD3Q3KNS1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
PTCHD3Q3KNS1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
PTCHD3Q3KNS1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms