Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC31.92■■■□□ 2.7
MSH6P52701 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
MSH6P52701 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
MSH6P52701 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC31.92■■■□□ 2.7
MSH6P52701 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
MSH6P52701 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.92■■■□□ 2.7
MSH6P52701 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC31.91■■■□□ 2.7
MSH6P52701 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
MSH6P52701 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
MSH6P52701 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC31.91■■■□□ 2.7
MSH6P52701 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
MSH6P52701 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
MSH6P52701 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC31.9■■■□□ 2.7
MSH6P52701 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC31.9■■■□□ 2.7
MSH6P52701 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC31.9■■■□□ 2.7
MSH6P52701 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC31.89■■■□□ 2.7
MSH6P52701 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
MSH6P52701 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.89■■■□□ 2.7
MSH6P52701 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
MSH6P52701 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
MSH6P52701 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
MSH6P52701 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
MSH6P52701 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC31.88■■■□□ 2.69
MSH6P52701 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.87■■■□□ 2.69
MSH6P52701 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
MSH6P52701 AC006015.1-201ENST00000429970 570 ntBASIC31.87■■■□□ 2.69
MSH6P52701 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
MSH6P52701 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
MSH6P52701 AC104771.1-201ENST00000603335 964 ntBASIC31.87■■■□□ 2.69
MSH6P52701 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC31.87■■■□□ 2.69
MSH6P52701 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
MSH6P52701 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
MSH6P52701 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.87■■■□□ 2.69
MSH6P52701 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC31.86■■■□□ 2.69
MSH6P52701 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.86■■■□□ 2.69
MSH6P52701 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
MSH6P52701 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
MSH6P52701 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC31.86■■■□□ 2.69
MSH6P52701 AC073111.5-205ENST00000641717 521 ntBASIC31.86■■■□□ 2.69
MSH6P52701 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.86■■■□□ 2.69
MSH6P52701 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
MSH6P52701 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
MSH6P52701 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC31.85■■■□□ 2.69
MSH6P52701 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC31.85■■■□□ 2.69
MSH6P52701 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC31.85■■■□□ 2.69
MSH6P52701 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
MSH6P52701 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
MSH6P52701 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
MSH6P52701 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC31.84■■■□□ 2.69
MSH6P52701 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC31.84■■■□□ 2.69
MSH6P52701 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC31.84■■■□□ 2.69
MSH6P52701 CDCA4P2-201ENST00000441182 718 ntBASIC31.84■■■□□ 2.69
MSH6P52701 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC31.84■■■□□ 2.69
MSH6P52701 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC31.84■■■□□ 2.69
MSH6P52701 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
MSH6P52701 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
MSH6P52701 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
MSH6P52701 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC31.83■■■□□ 2.69
MSH6P52701 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
MSH6P52701 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
MSH6P52701 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC31.83■■■□□ 2.69
MSH6P52701 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC31.82■■■□□ 2.69
MSH6P52701 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC31.82■■■□□ 2.69
MSH6P52701 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.69
MSH6P52701 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC31.82■■■□□ 2.69
MSH6P52701 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.82■■■□□ 2.68
MSH6P52701 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
MSH6P52701 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
MSH6P52701 TMEM191A-211ENST00000637163 1067 ntBASIC31.81■■■□□ 2.68
MSH6P52701 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.81■■■□□ 2.68
MSH6P52701 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
MSH6P52701 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC31.81■■■□□ 2.68
MSH6P52701 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MSH6P52701 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MSH6P52701 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MSH6P52701 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC31.8■■■□□ 2.68
MSH6P52701 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
MSH6P52701 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC31.8■■■□□ 2.68
MSH6P52701 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
MSH6P52701 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
MSH6P52701 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.8■■■□□ 2.68
MSH6P52701 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
MSH6P52701 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC31.79■■■□□ 2.68
MSH6P52701 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
MSH6P52701 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
MSH6P52701 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
MSH6P52701 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC31.79■■■□□ 2.68
MSH6P52701 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
MSH6P52701 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
MSH6P52701 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC31.78■■■□□ 2.68
MSH6P52701 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC31.78■■■□□ 2.68
MSH6P52701 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms