Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.57■■□□□ 1.84
CTCFP49711 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC26.57■■□□□ 1.84
CTCFP49711 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CTCFP49711 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC26.57■■□□□ 1.84
CTCFP49711 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
CTCFP49711 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.57■■□□□ 1.84
CTCFP49711 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.57■■□□□ 1.84
CTCFP49711 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CTCFP49711 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CTCFP49711 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
CTCFP49711 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CTCFP49711 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.56■■□□□ 1.84
CTCFP49711 AC142086.2-201ENST00000569753 217 ntBASIC26.56■■□□□ 1.84
CTCFP49711 AC009086.3-201ENST00000623486 1008 ntBASIC26.56■■□□□ 1.84
CTCFP49711 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
CTCFP49711 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
CTCFP49711 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CTCFP49711 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 HSCB-202ENST00000398941 955 ntTSL 2 BASIC26.55■■□□□ 1.84
CTCFP49711 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.55■■□□□ 1.84
CTCFP49711 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CTCFP49711 C17orf82-201ENST00000623772 1530 ntBASIC26.55■■□□□ 1.84
CTCFP49711 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
CTCFP49711 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CTCFP49711 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CTCFP49711 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC26.54■■□□□ 1.84
CTCFP49711 CBFB-203ENST00000561924 584 ntTSL 5 BASIC26.54■■□□□ 1.84
CTCFP49711 AC008687.6-201ENST00000596318 630 ntBASIC26.54■■□□□ 1.84
CTCFP49711 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC26.54■■□□□ 1.84
CTCFP49711 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CTCFP49711 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC26.53■■□□□ 1.84
CTCFP49711 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.53■■□□□ 1.84
CTCFP49711 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CTCFP49711 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CTCFP49711 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CTCFP49711 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC26.52■■□□□ 1.84
CTCFP49711 MIR4651-201ENST00000582622 73 ntBASIC26.52■■□□□ 1.84
CTCFP49711 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC26.52■■□□□ 1.84
CTCFP49711 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CTCFP49711 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CTCFP49711 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CTCFP49711 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CTCFP49711 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CTCFP49711 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
CTCFP49711 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
CTCFP49711 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CTCFP49711 STX7-201ENST00000367937 1090 ntTSL 5 BASIC26.5■■□□□ 1.83
CTCFP49711 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTCFP49711 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTCFP49711 METTL26-203ENST00000397664 604 ntTSL 2 BASIC26.5■■□□□ 1.83
CTCFP49711 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTCFP49711 DBI-210ENST00000542275 757 ntTSL 5 BASIC26.5■■□□□ 1.83
CTCFP49711 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CTCFP49711 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC26.5■■□□□ 1.83
CTCFP49711 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC26.5■■□□□ 1.83
CTCFP49711 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.5■■□□□ 1.83
CTCFP49711 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
CTCFP49711 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC26.49■■□□□ 1.83
CTCFP49711 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CTCFP49711 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.49■■□□□ 1.83
CTCFP49711 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
CTCFP49711 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.49■■□□□ 1.83
CTCFP49711 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CTCFP49711 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.48■■□□□ 1.83
CTCFP49711 MIR663A-201ENST00000385250 93 ntBASIC26.48■■□□□ 1.83
CTCFP49711 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC26.48■■□□□ 1.83
CTCFP49711 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CTCFP49711 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CTCFP49711 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.47■■□□□ 1.83
CTCFP49711 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CTCFP49711 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
CTCFP49711 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.47■■□□□ 1.83
CTCFP49711 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC26.47■■□□□ 1.83
CTCFP49711 GALNS-213ENST00000569433 723 ntTSL 3 BASIC26.47■■□□□ 1.83
CTCFP49711 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC26.47■■□□□ 1.83
CTCFP49711 GAMT-205ENST00000640762 751 ntTSL 5 BASIC26.47■■□□□ 1.83
CTCFP49711 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CTCFP49711 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC26.47■■□□□ 1.83
CTCFP49711 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CTCFP49711 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CTCFP49711 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CTCFP49711 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CTCFP49711 KRT18P61-201ENST00000585825 1298 ntBASIC26.46■■□□□ 1.83
CTCFP49711 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CTCFP49711 AC087239.1-201ENST00000622671 572 ntBASIC26.46■■□□□ 1.83
CTCFP49711 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC26.46■■□□□ 1.83
CTCFP49711 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC26.45■■□□□ 1.82
CTCFP49711 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC26.45■■□□□ 1.82
CTCFP49711 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
CTCFP49711 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CTCFP49711 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms