Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
CXCL12P48061 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
CXCL12P48061 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 DLX3-202ENST00000512495 834 ntTSL 2 BASIC22.89■■□□□ 1.25
CXCL12P48061 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.89■■□□□ 1.25
CXCL12P48061 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.89■■□□□ 1.25
CXCL12P48061 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CXCL12P48061 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
CXCL12P48061 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CXCL12P48061 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC22.88■■□□□ 1.25
CXCL12P48061 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.88■■□□□ 1.25
CXCL12P48061 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.88■■□□□ 1.25
CXCL12P48061 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.88■■□□□ 1.25
CXCL12P48061 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC22.88■■□□□ 1.25
CXCL12P48061 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
CXCL12P48061 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
CXCL12P48061 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CXCL12P48061 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CXCL12P48061 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.88■■□□□ 1.25
CXCL12P48061 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CXCL12P48061 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CXCL12P48061 SLC6A10P-202ENST00000431994 2058 ntBASIC22.87■■□□□ 1.25
CXCL12P48061 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.87■■□□□ 1.25
CXCL12P48061 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CXCL12P48061 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.86■■□□□ 1.25
CXCL12P48061 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CXCL12P48061 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.86■■□□□ 1.25
CXCL12P48061 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
CXCL12P48061 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CXCL12P48061 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC22.86■■□□□ 1.25
CXCL12P48061 MIR6089-201ENST00000616698 64 ntBASIC22.86■■□□□ 1.25
CXCL12P48061 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CXCL12P48061 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CXCL12P48061 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.86■■□□□ 1.25
CXCL12P48061 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CXCL12P48061 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
CXCL12P48061 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CXCL12P48061 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CXCL12P48061 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.85■■□□□ 1.25
CXCL12P48061 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CXCL12P48061 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.85■■□□□ 1.25
CXCL12P48061 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.85■■□□□ 1.25
CXCL12P48061 MIR572-201ENST00000384983 95 ntBASIC22.85■■□□□ 1.25
CXCL12P48061 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
CXCL12P48061 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.85■■□□□ 1.25
CXCL12P48061 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.85■■□□□ 1.25
CXCL12P48061 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.85■■□□□ 1.25
CXCL12P48061 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CXCL12P48061 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.84■■□□□ 1.25
CXCL12P48061 IGHV3-19-201ENST00000521488 291 ntBASIC22.84■■□□□ 1.25
CXCL12P48061 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.84■■□□□ 1.25
CXCL12P48061 AL354811.1-201ENST00000610286 706 ntBASIC22.84■■□□□ 1.25
CXCL12P48061 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC22.84■■□□□ 1.25
CXCL12P48061 MIR6084-201ENST00000622012 110 ntBASIC22.84■■□□□ 1.25
CXCL12P48061 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.84■■□□□ 1.25
CXCL12P48061 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.84■■□□□ 1.25
CXCL12P48061 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.83■■□□□ 1.25
CXCL12P48061 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.83■■□□□ 1.25
CXCL12P48061 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
CXCL12P48061 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
CXCL12P48061 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.83■■□□□ 1.25
CXCL12P48061 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.83■■□□□ 1.25
CXCL12P48061 AC012414.1-201ENST00000556676 535 ntBASIC22.83■■□□□ 1.25
CXCL12P48061 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CXCL12P48061 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.82■■□□□ 1.24
CXCL12P48061 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CXCL12P48061 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CXCL12P48061 CCDC92B-201ENST00000575506 885 ntBASIC22.82■■□□□ 1.24
CXCL12P48061 NTF6G-201ENST00000591094 616 ntBASIC22.82■■□□□ 1.24
CXCL12P48061 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC22.82■■□□□ 1.24
CXCL12P48061 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.82■■□□□ 1.24
CXCL12P48061 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CXCL12P48061 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.82■■□□□ 1.24
CXCL12P48061 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
CXCL12P48061 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CXCL12P48061 AC092803.2-201ENST00000564287 1899 ntBASIC22.81■■□□□ 1.24
CXCL12P48061 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.81■■□□□ 1.24
CXCL12P48061 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
CXCL12P48061 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CXCL12P48061 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
CXCL12P48061 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.81■■□□□ 1.24
CXCL12P48061 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CXCL12P48061 VPS53-216ENST00000574029 585 ntTSL 4 BASIC22.81■■□□□ 1.24
CXCL12P48061 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CXCL12P48061 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
CXCL12P48061 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 AC141586.4-201ENST00000624558 1573 ntBASIC22.8■■□□□ 1.24
CXCL12P48061 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.8■■□□□ 1.24
CXCL12P48061 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC22.8■■□□□ 1.24
CXCL12P48061 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.8■■□□□ 1.24
CXCL12P48061 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
CXCL12P48061 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms