Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN4AP35499 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN4AP35499 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
SCN4AP35499 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC27.4■■□□□ 1.98
SCN4AP35499 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.4■■□□□ 1.98
SCN4AP35499 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SCN4AP35499 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.4■■□□□ 1.98
SCN4AP35499 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC27.39■■□□□ 1.98
SCN4AP35499 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.39■■□□□ 1.98
SCN4AP35499 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC27.39■■□□□ 1.98
SCN4AP35499 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.39■■□□□ 1.98
SCN4AP35499 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC27.39■■□□□ 1.98
SCN4AP35499 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC27.39■■□□□ 1.98
SCN4AP35499 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
SCN4AP35499 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
SCN4AP35499 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
SCN4AP35499 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
SCN4AP35499 pRNA.6-201ENST00000610482 90 ntBASIC27.39■■□□□ 1.97
SCN4AP35499 AC080038.1-201ENST00000611274 1154 ntBASIC27.39■■□□□ 1.97
SCN4AP35499 pRNA.5-201ENST00000612139 90 ntBASIC27.39■■□□□ 1.97
SCN4AP35499 pRNA.11-201ENST00000618423 90 ntBASIC27.39■■□□□ 1.97
SCN4AP35499 pRNA.13-201ENST00000619112 90 ntBASIC27.39■■□□□ 1.97
SCN4AP35499 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC27.39■■□□□ 1.97
SCN4AP35499 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC27.38■■□□□ 1.97
SCN4AP35499 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.38■■□□□ 1.97
SCN4AP35499 CDCA4P2-201ENST00000441182 718 ntBASIC27.38■■□□□ 1.97
SCN4AP35499 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
SCN4AP35499 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC27.38■■□□□ 1.97
SCN4AP35499 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SCN4AP35499 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.37■■□□□ 1.97
SCN4AP35499 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.37■■□□□ 1.97
SCN4AP35499 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.37■■□□□ 1.97
SCN4AP35499 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27.37■■□□□ 1.97
SCN4AP35499 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SCN4AP35499 NT5C3AP1-201ENST00000394500 1012 ntBASIC27.37■■□□□ 1.97
SCN4AP35499 AC026185.1-201ENST00000445748 174 ntBASIC27.37■■□□□ 1.97
SCN4AP35499 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC27.37■■□□□ 1.97
SCN4AP35499 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SCN4AP35499 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SCN4AP35499 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SCN4AP35499 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
SCN4AP35499 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC27.36■■□□□ 1.97
SCN4AP35499 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.36■■□□□ 1.97
SCN4AP35499 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SCN4AP35499 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SCN4AP35499 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC27.35■■□□□ 1.97
SCN4AP35499 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.35■■□□□ 1.97
SCN4AP35499 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27.35■■□□□ 1.97
SCN4AP35499 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.35■■□□□ 1.97
SCN4AP35499 KRT18P61-201ENST00000585825 1298 ntBASIC27.34■■□□□ 1.97
SCN4AP35499 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC27.34■■□□□ 1.97
SCN4AP35499 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SCN4AP35499 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
SCN4AP35499 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SCN4AP35499 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
SCN4AP35499 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
SCN4AP35499 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.34■■□□□ 1.97
SCN4AP35499 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC27.34■■□□□ 1.97
SCN4AP35499 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SCN4AP35499 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SCN4AP35499 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC27.33■■□□□ 1.97
SCN4AP35499 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SCN4AP35499 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.33■■□□□ 1.97
SCN4AP35499 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.33■■□□□ 1.97
SCN4AP35499 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SCN4AP35499 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.33■■□□□ 1.96
SCN4AP35499 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SCN4AP35499 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SCN4AP35499 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SCN4AP35499 AL355802.2-201ENST00000402069 882 ntBASIC27.32■■□□□ 1.96
SCN4AP35499 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SCN4AP35499 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC27.32■■□□□ 1.96
SCN4AP35499 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC27.32■■□□□ 1.96
SCN4AP35499 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SCN4AP35499 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.32■■□□□ 1.96
SCN4AP35499 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.32■■□□□ 1.96
SCN4AP35499 AC137761.2-201ENST00000561729 223 ntBASIC27.32■■□□□ 1.96
SCN4AP35499 AC145350.3-201ENST00000569033 163 ntBASIC27.32■■□□□ 1.96
SCN4AP35499 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.32■■□□□ 1.96
SCN4AP35499 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
SCN4AP35499 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN4AP35499 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.31■■□□□ 1.96
SCN4AP35499 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.31■■□□□ 1.96
SCN4AP35499 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN4AP35499 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC27.31■■□□□ 1.96
SCN4AP35499 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SCN4AP35499 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC27.31■■□□□ 1.96
SCN4AP35499 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SCN4AP35499 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC27.3■■□□□ 1.96
SCN4AP35499 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC27.3■■□□□ 1.96
SCN4AP35499 AC066615.1-201ENST00000640911 628 ntBASIC27.3■■□□□ 1.96
SCN4AP35499 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
SCN4AP35499 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SCN4AP35499 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms