Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SHMT1P34896 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
SHMT1P34896 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.78■■□□□ 1.88
SHMT1P34896 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHMT1P34896 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHMT1P34896 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.77■■□□□ 1.88
SHMT1P34896 MIR939-201ENST00000401314 82 ntBASIC26.77■■□□□ 1.88
SHMT1P34896 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHMT1P34896 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SHMT1P34896 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
SHMT1P34896 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.76■■□□□ 1.87
SHMT1P34896 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.76■■□□□ 1.87
SHMT1P34896 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHMT1P34896 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SHMT1P34896 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.75■■□□□ 1.87
SHMT1P34896 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
SHMT1P34896 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SHMT1P34896 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC26.75■■□□□ 1.87
SHMT1P34896 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC26.75■■□□□ 1.87
SHMT1P34896 AC241377.3-202ENST00000626088 1088 ntBASIC26.75■■□□□ 1.87
SHMT1P34896 AC241585.3-202ENST00000628937 1088 ntBASIC26.75■■□□□ 1.87
SHMT1P34896 AC245100.8-202ENST00000629247 1058 ntBASIC26.75■■□□□ 1.87
SHMT1P34896 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.75■■□□□ 1.87
SHMT1P34896 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.75■■□□□ 1.87
SHMT1P34896 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
SHMT1P34896 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHMT1P34896 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.74■■□□□ 1.87
SHMT1P34896 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SHMT1P34896 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHMT1P34896 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SHMT1P34896 AL138724.1-201ENST00000606771 1088 ntBASIC26.74■■□□□ 1.87
SHMT1P34896 AC011298.3-201ENST00000615796 283 ntBASIC26.74■■□□□ 1.87
SHMT1P34896 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SHMT1P34896 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
SHMT1P34896 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SHMT1P34896 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.73■■□□□ 1.87
SHMT1P34896 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.73■■□□□ 1.87
SHMT1P34896 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.73■■□□□ 1.87
SHMT1P34896 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SHMT1P34896 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.72■■□□□ 1.87
SHMT1P34896 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.72■■□□□ 1.87
SHMT1P34896 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.72■■□□□ 1.87
SHMT1P34896 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.72■■□□□ 1.87
SHMT1P34896 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
SHMT1P34896 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SHMT1P34896 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SHMT1P34896 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.71■■□□□ 1.87
SHMT1P34896 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
SHMT1P34896 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SHMT1P34896 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
SHMT1P34896 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SHMT1P34896 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.7■■□□□ 1.87
SHMT1P34896 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SHMT1P34896 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.86
SHMT1P34896 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SHMT1P34896 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.7■■□□□ 1.86
SHMT1P34896 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SHMT1P34896 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
SHMT1P34896 MIR3181-201ENST00000578512 73 ntBASIC26.7■■□□□ 1.86
SHMT1P34896 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.7■■□□□ 1.86
SHMT1P34896 AC009086.3-201ENST00000623486 1008 ntBASIC26.7■■□□□ 1.86
SHMT1P34896 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.7■■□□□ 1.86
SHMT1P34896 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
SHMT1P34896 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SHMT1P34896 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SHMT1P34896 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.69■■□□□ 1.86
SHMT1P34896 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.69■■□□□ 1.86
SHMT1P34896 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
SHMT1P34896 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.69■■□□□ 1.86
SHMT1P34896 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC26.69■■□□□ 1.86
SHMT1P34896 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.69■■□□□ 1.86
SHMT1P34896 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.69■■□□□ 1.86
SHMT1P34896 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SHMT1P34896 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SHMT1P34896 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
SHMT1P34896 AC105265.2-201ENST00000467189 838 ntBASIC26.68■■□□□ 1.86
SHMT1P34896 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.68■■□□□ 1.86
SHMT1P34896 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SHMT1P34896 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SHMT1P34896 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
SHMT1P34896 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.68■■□□□ 1.86
SHMT1P34896 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.68■■□□□ 1.86
SHMT1P34896 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
SHMT1P34896 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
SHMT1P34896 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC26.67■■□□□ 1.86
SHMT1P34896 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.67■■□□□ 1.86
SHMT1P34896 AC136469.2-201ENST00000623944 1028 ntBASIC26.67■■□□□ 1.86
SHMT1P34896 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SHMT1P34896 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SHMT1P34896 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SHMT1P34896 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC26.66■■□□□ 1.86
SHMT1P34896 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.66■■□□□ 1.86
SHMT1P34896 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SHMT1P34896 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SHMT1P34896 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms