Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.14■□□□□ 0.65
USF1P22415 MIR5787-201ENST00000611784 55 ntBASIC19.14■□□□□ 0.65
USF1P22415 AC092666.2-201ENST00000613287 246 ntBASIC19.14■□□□□ 0.65
USF1P22415 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.14■□□□□ 0.65
USF1P22415 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
USF1P22415 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.14■□□□□ 0.65
USF1P22415 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USF1P22415 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USF1P22415 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USF1P22415 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USF1P22415 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.13■□□□□ 0.65
USF1P22415 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.13■□□□□ 0.65
USF1P22415 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 MIR939-201ENST00000401314 82 ntBASIC19.13■□□□□ 0.65
USF1P22415 AC026271.2-201ENST00000428091 497 ntBASIC19.13■□□□□ 0.65
USF1P22415 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.13■□□□□ 0.65
USF1P22415 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
USF1P22415 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
USF1P22415 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USF1P22415 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.13■□□□□ 0.65
USF1P22415 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF1P22415 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.12■□□□□ 0.65
USF1P22415 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USF1P22415 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USF1P22415 AC131274.2-201ENST00000580697 1507 ntBASIC19.12■□□□□ 0.65
USF1P22415 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USF1P22415 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.12■□□□□ 0.65
USF1P22415 AC091305.1-201ENST00000479476 895 ntBASIC19.12■□□□□ 0.65
USF1P22415 AP001330.3-201ENST00000520123 633 ntBASIC19.12■□□□□ 0.65
USF1P22415 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.12■□□□□ 0.65
USF1P22415 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.12■□□□□ 0.65
USF1P22415 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF1P22415 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.11■□□□□ 0.65
USF1P22415 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF1P22415 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF1P22415 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USF1P22415 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USF1P22415 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.1■□□□□ 0.65
USF1P22415 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
USF1P22415 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USF1P22415 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USF1P22415 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.1■□□□□ 0.65
USF1P22415 MIR4767-201ENST00000582827 78 ntBASIC19.1■□□□□ 0.65
USF1P22415 AC138932.3-201ENST00000567634 1902 ntBASIC19.1■□□□□ 0.65
USF1P22415 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USF1P22415 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.09■□□□□ 0.65
USF1P22415 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USF1P22415 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.09■□□□□ 0.65
USF1P22415 AC099791.2-201ENST00000605725 427 ntBASIC19.09■□□□□ 0.65
USF1P22415 AL022069.1-201ENST00000568025 1636 ntBASIC19.09■□□□□ 0.65
USF1P22415 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USF1P22415 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USF1P22415 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.08■□□□□ 0.65
USF1P22415 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USF1P22415 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USF1P22415 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USF1P22415 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USF1P22415 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USF1P22415 SERBP1P1-201ENST00000396021 1160 ntBASIC19.08■□□□□ 0.64
USF1P22415 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USF1P22415 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.08■□□□□ 0.64
USF1P22415 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
USF1P22415 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USF1P22415 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USF1P22415 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USF1P22415 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.07■□□□□ 0.64
USF1P22415 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
USF1P22415 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.07■□□□□ 0.64
USF1P22415 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.07■□□□□ 0.64
USF1P22415 AL138724.1-201ENST00000606771 1088 ntBASIC19.07■□□□□ 0.64
USF1P22415 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
USF1P22415 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USF1P22415 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.07■□□□□ 0.64
USF1P22415 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.06■□□□□ 0.64
USF1P22415 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.06■□□□□ 0.64
USF1P22415 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 AC104564.3-201ENST00000582367 638 ntBASIC19.06■□□□□ 0.64
USF1P22415 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USF1P22415 RASA4CP-201ENST00000424092 1398 ntBASIC19.06■□□□□ 0.64
USF1P22415 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.05■□□□□ 0.64
USF1P22415 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms