Protein–RNA interactions for Protein: O95832

CLDN1, Claudin-1, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1O95832 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN1O95832 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN1O95832 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN1O95832 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CLDN1O95832 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN1O95832 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN1O95832 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN1O95832 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLDN1O95832 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.22■□□□□ 0.83
CLDN1O95832 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN1O95832 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN1O95832 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 BX842568.3-201ENST00000418104 571 ntBASIC20.21■□□□□ 0.83
CLDN1O95832 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN1O95832 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN1O95832 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN1O95832 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
CLDN1O95832 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLDN1O95832 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.2■□□□□ 0.82
CLDN1O95832 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN1O95832 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN1O95832 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.19■□□□□ 0.82
CLDN1O95832 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.19■□□□□ 0.82
CLDN1O95832 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.19■□□□□ 0.82
CLDN1O95832 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN1O95832 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
CLDN1O95832 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN1O95832 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN1O95832 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
CLDN1O95832 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN1O95832 AC092803.2-201ENST00000564287 1899 ntBASIC20.18■□□□□ 0.82
CLDN1O95832 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN1O95832 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CLDN1O95832 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.18■□□□□ 0.82
CLDN1O95832 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.18■□□□□ 0.82
CLDN1O95832 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN1O95832 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.18■□□□□ 0.82
CLDN1O95832 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLDN1O95832 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CLDN1O95832 AC245100.8-202ENST00000629247 1058 ntBASIC20.17■□□□□ 0.82
CLDN1O95832 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLDN1O95832 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN1O95832 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.16■□□□□ 0.82
CLDN1O95832 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.16■□□□□ 0.82
CLDN1O95832 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.16■□□□□ 0.82
CLDN1O95832 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLDN1O95832 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CLDN1O95832 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLDN1O95832 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN1O95832 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN1O95832 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.15■□□□□ 0.82
CLDN1O95832 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN1O95832 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.15■□□□□ 0.82
CLDN1O95832 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 AC009102.2-201ENST00000606772 1639 ntBASIC20.15■□□□□ 0.82
CLDN1O95832 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
CLDN1O95832 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLDN1O95832 AC123595.1-201ENST00000440769 1046 ntBASIC20.14■□□□□ 0.81
CLDN1O95832 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.14■□□□□ 0.81
CLDN1O95832 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.14■□□□□ 0.81
CLDN1O95832 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLDN1O95832 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms