Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
PCF11O94913 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC35.84■■■■□ 3.33
PCF11O94913 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC35.83■■■■□ 3.33
PCF11O94913 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
PCF11O94913 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC35.83■■■■□ 3.33
PCF11O94913 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
PCF11O94913 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
PCF11O94913 CA15P2-201ENST00000611168 834 ntBASIC35.82■■■■□ 3.32
PCF11O94913 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
PCF11O94913 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC35.81■■■■□ 3.32
PCF11O94913 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC35.81■■■■□ 3.32
PCF11O94913 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC35.81■■■■□ 3.32
PCF11O94913 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
PCF11O94913 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
PCF11O94913 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC35.81■■■■□ 3.32
PCF11O94913 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC35.81■■■■□ 3.32
PCF11O94913 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
PCF11O94913 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC35.8■■■■□ 3.32
PCF11O94913 SNX3-202ENST00000349379 890 ntTSL 2 BASIC35.8■■■■□ 3.32
PCF11O94913 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC35.8■■■■□ 3.32
PCF11O94913 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC35.8■■■■□ 3.32
PCF11O94913 AC241377.3-202ENST00000626088 1088 ntBASIC35.8■■■■□ 3.32
PCF11O94913 AC241585.3-202ENST00000628937 1088 ntBASIC35.8■■■■□ 3.32
PCF11O94913 AC245100.8-202ENST00000629247 1058 ntBASIC35.8■■■■□ 3.32
PCF11O94913 VGF-203ENST00000611537 1622 ntTSL 5 BASIC35.79■■■■□ 3.32
PCF11O94913 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC35.79■■■■□ 3.32
PCF11O94913 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
PCF11O94913 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC35.79■■■■□ 3.32
PCF11O94913 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC35.78■■■■□ 3.32
PCF11O94913 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC35.78■■■■□ 3.32
PCF11O94913 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
PCF11O94913 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC35.78■■■■□ 3.32
PCF11O94913 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC35.78■■■■□ 3.32
PCF11O94913 STOX2-205ENST00000513034 807 ntTSL 3 BASIC35.78■■■■□ 3.32
PCF11O94913 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC35.78■■■■□ 3.32
PCF11O94913 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
PCF11O94913 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC35.78■■■■□ 3.32
PCF11O94913 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC35.78■■■■□ 3.32
PCF11O94913 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC35.77■■■■□ 3.32
PCF11O94913 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC35.77■■■■□ 3.32
PCF11O94913 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
PCF11O94913 AC099791.1-201ENST00000416440 715 ntBASIC35.76■■■■□ 3.32
PCF11O94913 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
PCF11O94913 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC35.76■■■■□ 3.32
PCF11O94913 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC35.76■■■■□ 3.32
PCF11O94913 CREM-210ENST00000374721 2020 ntTSL 5 BASIC35.76■■■■□ 3.32
PCF11O94913 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC35.76■■■■□ 3.31
PCF11O94913 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC35.76■■■■□ 3.31
PCF11O94913 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.31
PCF11O94913 AC097381.1-201ENST00000429019 1296 ntBASIC35.76■■■■□ 3.31
PCF11O94913 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC35.76■■■■□ 3.31
PCF11O94913 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC35.76■■■■□ 3.31
PCF11O94913 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC35.76■■■■□ 3.31
PCF11O94913 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.31
PCF11O94913 RASA4CP-201ENST00000424092 1398 ntBASIC35.75■■■■□ 3.31
PCF11O94913 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
PCF11O94913 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
PCF11O94913 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC35.75■■■■□ 3.31
PCF11O94913 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC35.75■■■■□ 3.31
PCF11O94913 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC35.75■■■■□ 3.31
PCF11O94913 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
PCF11O94913 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC35.74■■■■□ 3.31
PCF11O94913 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
PCF11O94913 AP003733.4-201ENST00000623785 1697 ntBASIC35.73■■■■□ 3.31
PCF11O94913 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC35.73■■■■□ 3.31
PCF11O94913 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC35.73■■■■□ 3.31
PCF11O94913 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC35.73■■■■□ 3.31
PCF11O94913 RARRES2P11-201ENST00000635158 484 ntBASIC35.73■■■■□ 3.31
PCF11O94913 AC138932.3-201ENST00000567634 1902 ntBASIC35.73■■■■□ 3.31
PCF11O94913 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC35.73■■■■□ 3.31
PCF11O94913 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
PCF11O94913 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC35.72■■■■□ 3.31
PCF11O94913 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
PCF11O94913 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC35.72■■■■□ 3.31
PCF11O94913 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
PCF11O94913 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC35.72■■■■□ 3.31
PCF11O94913 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC35.72■■■■□ 3.31
PCF11O94913 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC35.72■■■■□ 3.31
PCF11O94913 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
PCF11O94913 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC35.71■■■■□ 3.31
PCF11O94913 HYI-206ENST00000372434 1025 ntTSL 5 BASIC35.71■■■■□ 3.31
PCF11O94913 HES6-206ENST00000409574 738 ntTSL 2 BASIC35.71■■■■□ 3.31
PCF11O94913 MIR3181-201ENST00000578512 73 ntBASIC35.71■■■■□ 3.31
PCF11O94913 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
PCF11O94913 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC35.71■■■■□ 3.31
PCF11O94913 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC35.71■■■■□ 3.31
PCF11O94913 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC35.71■■■■□ 3.31
PCF11O94913 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
PCF11O94913 GTSE1-AS1-202ENST00000623117 1518 ntBASIC35.7■■■■□ 3.31
PCF11O94913 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
PCF11O94913 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC35.7■■■■□ 3.31
PCF11O94913 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
PCF11O94913 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC35.7■■■■□ 3.3
PCF11O94913 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC35.69■■■■□ 3.3
PCF11O94913 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
PCF11O94913 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC35.69■■■■□ 3.3
PCF11O94913 AC087623.3-201ENST00000607047 1098 ntBASIC35.69■■■■□ 3.3
PCF11O94913 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
PCF11O94913 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC35.69■■■■□ 3.3
PCF11O94913 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC35.69■■■■□ 3.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms