Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.52■■□□□ 1.04
PROM1O43490 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PROM1O43490 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PROM1O43490 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.51■■□□□ 1.03
PROM1O43490 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PROM1O43490 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 AC012676.1-201ENST00000574705 1949 ntBASIC21.51■■□□□ 1.03
PROM1O43490 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.51■■□□□ 1.03
PROM1O43490 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
PROM1O43490 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.5■■□□□ 1.03
PROM1O43490 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.5■■□□□ 1.03
PROM1O43490 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PROM1O43490 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PROM1O43490 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.5■■□□□ 1.03
PROM1O43490 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
PROM1O43490 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.5■■□□□ 1.03
PROM1O43490 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PROM1O43490 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PROM1O43490 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PROM1O43490 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PROM1O43490 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.49■■□□□ 1.03
PROM1O43490 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PROM1O43490 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
PROM1O43490 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
PROM1O43490 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.48■■□□□ 1.03
PROM1O43490 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PROM1O43490 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
PROM1O43490 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PROM1O43490 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.47■■□□□ 1.03
PROM1O43490 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
PROM1O43490 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PROM1O43490 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.46■■□□□ 1.03
PROM1O43490 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.46■■□□□ 1.03
PROM1O43490 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.46■■□□□ 1.03
PROM1O43490 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
PROM1O43490 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
PROM1O43490 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PROM1O43490 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
PROM1O43490 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PROM1O43490 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PROM1O43490 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PROM1O43490 TSPY9P-201ENST00000440215 945 ntBASIC21.45■■□□□ 1.02
PROM1O43490 TSPY11P-201ENST00000442607 1045 ntBASIC21.45■■□□□ 1.02
PROM1O43490 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.45■■□□□ 1.02
PROM1O43490 MTDHP2-201ENST00000601468 714 ntBASIC21.45■■□□□ 1.02
PROM1O43490 AC010997.5-201ENST00000609182 354 ntBASIC21.45■■□□□ 1.02
PROM1O43490 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.45■■□□□ 1.02
PROM1O43490 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PROM1O43490 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PROM1O43490 AC133561.1-201ENST00000568600 2415 ntBASIC21.45■■□□□ 1.02
PROM1O43490 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PROM1O43490 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.44■■□□□ 1.02
PROM1O43490 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PROM1O43490 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.44■■□□□ 1.02
PROM1O43490 UNC93B8-201ENST00000511903 705 ntBASIC21.44■■□□□ 1.02
PROM1O43490 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.44■■□□□ 1.02
PROM1O43490 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PROM1O43490 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PROM1O43490 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PROM1O43490 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.43■■□□□ 1.02
PROM1O43490 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.43■■□□□ 1.02
PROM1O43490 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.43■■□□□ 1.02
PROM1O43490 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PROM1O43490 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.43■■□□□ 1.02
PROM1O43490 GUSBP5-201ENST00000418136 578 ntBASIC21.43■■□□□ 1.02
PROM1O43490 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.43■■□□□ 1.02
PROM1O43490 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms