Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC37.61■■■■□ 3.61
CHD1O14646 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC37.61■■■■□ 3.61
CHD1O14646 pRNA.6-201ENST00000610482 90 ntBASIC37.61■■■■□ 3.61
CHD1O14646 pRNA.5-201ENST00000612139 90 ntBASIC37.61■■■■□ 3.61
CHD1O14646 pRNA.11-201ENST00000618423 90 ntBASIC37.61■■■■□ 3.61
CHD1O14646 pRNA.13-201ENST00000619112 90 ntBASIC37.61■■■■□ 3.61
CHD1O14646 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
CHD1O14646 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC37.61■■■■□ 3.61
CHD1O14646 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
CHD1O14646 GAS2L1P2-201ENST00000436355 1356 ntBASIC37.6■■■■□ 3.61
CHD1O14646 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
CHD1O14646 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC37.6■■■■□ 3.61
CHD1O14646 AL499627.2-201ENST00000606283 725 ntBASIC37.6■■■■□ 3.61
CHD1O14646 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC37.6■■■■□ 3.61
CHD1O14646 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC37.6■■■■□ 3.61
CHD1O14646 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC37.59■■■■□ 3.61
CHD1O14646 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 AC006970.2-201ENST00000450065 779 ntBASIC37.59■■■■□ 3.61
CHD1O14646 STK32C-205ENST00000456004 607 ntTSL 2 BASIC37.59■■■■□ 3.61
CHD1O14646 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC37.59■■■■□ 3.61
CHD1O14646 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC37.59■■■■□ 3.61
CHD1O14646 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
CHD1O14646 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC37.58■■■■□ 3.61
CHD1O14646 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
CHD1O14646 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC37.58■■■■□ 3.61
CHD1O14646 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC37.58■■■■□ 3.61
CHD1O14646 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC37.58■■■■□ 3.61
CHD1O14646 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC37.57■■■■□ 3.61
CHD1O14646 AP005435.1-201ENST00000529293 1178 ntBASIC37.57■■■■□ 3.6
CHD1O14646 DBI-210ENST00000542275 757 ntTSL 5 BASIC37.57■■■■□ 3.6
CHD1O14646 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC37.56■■■■□ 3.6
CHD1O14646 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC37.56■■■■□ 3.6
CHD1O14646 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC37.56■■■■□ 3.6
CHD1O14646 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC37.56■■■■□ 3.6
CHD1O14646 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
CHD1O14646 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC37.56■■■■□ 3.6
CHD1O14646 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC37.56■■■■□ 3.6
CHD1O14646 HSCB-202ENST00000398941 955 ntTSL 2 BASIC37.55■■■■□ 3.6
CHD1O14646 NCF1B-203ENST00000435988 1254 ntBASIC37.55■■■■□ 3.6
CHD1O14646 APTR-205ENST00000447009 902 ntTSL 2 BASIC37.55■■■■□ 3.6
CHD1O14646 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC37.55■■■■□ 3.6
CHD1O14646 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC37.55■■■■□ 3.6
CHD1O14646 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC37.55■■■■□ 3.6
CHD1O14646 AC097639.1-201ENST00000565519 1891 ntBASIC37.54■■■■□ 3.6
CHD1O14646 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC37.54■■■■□ 3.6
CHD1O14646 CD99P1-205ENST00000527459 561 ntBASIC37.54■■■■□ 3.6
CHD1O14646 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
CHD1O14646 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC37.54■■■■□ 3.6
CHD1O14646 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC37.53■■■■□ 3.6
CHD1O14646 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC37.53■■■■□ 3.6
CHD1O14646 LINC02228-203ENST00000641970 1355 ntBASIC37.53■■■■□ 3.6
CHD1O14646 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC37.53■■■■□ 3.6
CHD1O14646 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC37.53■■■■□ 3.6
CHD1O14646 WWOX-218ENST00000627394 894 ntTSL 5 BASIC37.53■■■■□ 3.6
CHD1O14646 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC37.53■■■■□ 3.6
CHD1O14646 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC37.52■■■■□ 3.6
CHD1O14646 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC37.52■■■■□ 3.6
CHD1O14646 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC37.52■■■■□ 3.6
CHD1O14646 STX7-201ENST00000367937 1090 ntTSL 5 BASIC37.51■■■■□ 3.6
CHD1O14646 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC37.51■■■■□ 3.6
CHD1O14646 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC37.51■■■■□ 3.6
CHD1O14646 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC37.51■■■■□ 3.6
CHD1O14646 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC37.51■■■■□ 3.6
CHD1O14646 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
CHD1O14646 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
CHD1O14646 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC37.5■■■■□ 3.59
CHD1O14646 TSPY20P-201ENST00000450910 630 ntBASIC37.5■■■■□ 3.59
CHD1O14646 AC093827.2-201ENST00000512654 315 ntBASIC37.5■■■■□ 3.59
CHD1O14646 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC37.5■■■■□ 3.59
CHD1O14646 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC37.5■■■■□ 3.59
CHD1O14646 GAMT-205ENST00000640762 751 ntTSL 5 BASIC37.5■■■■□ 3.59
CHD1O14646 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC37.5■■■■□ 3.59
CHD1O14646 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC37.5■■■■□ 3.59
CHD1O14646 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC37.5■■■■□ 3.59
CHD1O14646 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC37.49■■■■□ 3.59
CHD1O14646 WT1-AS_3.1-201ENST00000613262 234 ntBASIC37.49■■■■□ 3.59
CHD1O14646 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC37.48■■■■□ 3.59
CHD1O14646 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC37.48■■■■□ 3.59
CHD1O14646 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC37.47■■■■□ 3.59
CHD1O14646 MIR4651-201ENST00000582622 73 ntBASIC37.47■■■■□ 3.59
CHD1O14646 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC37.47■■■■□ 3.59
CHD1O14646 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC37.47■■■■□ 3.59
CHD1O14646 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC37.47■■■■□ 3.59
CHD1O14646 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC37.47■■■■□ 3.59
CHD1O14646 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC37.46■■■■□ 3.59
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms