Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 SLC25A19-204ENST00000416858 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 MYL1-202ENST00000352451 1065 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 MIR1249-201ENST00000408671 66 ntBASIC13.1□□□□□ -0.31
CHD8Q9HCK8 GAPDHP65-201ENST00000425487 1006 ntBASIC13.1□□□□□ -0.31
CHD8Q9HCK8 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ABCC6P1-202ENST00000565118 796 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 MGST3-204ENST00000367888 778 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 CCL19-202ENST00000378800 414 ntTSL 2 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 PGK1P2-201ENST00000431702 1214 ntBASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AP003170.2-201ENST00000544730 786 ntBASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 AC123912.6-201ENST00000612657 315 ntBASIC13.1□□□□□ -0.31
CHD8Q9HCK8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHD8Q9HCK8 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 ACTBP14-201ENST00000411655 1089 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC074019.1-201ENST00000428788 1096 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 VDAC1P11-201ENST00000458323 852 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 RN7SL638P-201ENST00000494527 290 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC138781.1-201ENST00000501322 505 ntTSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 HINT1-208ENST00000513012 583 ntTSL 4 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 HNRNPA1P7-201ENST00000521273 963 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC024909.3-201ENST00000611513 2257 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 RN7SL479P-201ENST00000472003 300 ntBASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHD8Q9HCK8 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CHD8Q9HCK8 NKILA-202ENST00000614771 2598 ntBASIC13.08□□□□□ -0.31
CHD8Q9HCK8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
CHD8Q9HCK8 KRT8P43-201ENST00000406052 1458 ntBASIC13.08□□□□□ -0.31
CHD8Q9HCK8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
CHD8Q9HCK8 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.08□□□□□ -0.31
CHD8Q9HCK8 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
CHD8Q9HCK8 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
CHD8Q9HCK8 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHD8Q9HCK8 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CHD8Q9HCK8 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms