Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIMK1P53667 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIMK1P53667 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
LIMK1P53667 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
LIMK1P53667 AC004554.1-201ENST00000422830 1468 ntBASIC14.3□□□□□ -0.12
LIMK1P53667 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
LIMK1P53667 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.3□□□□□ -0.12
LIMK1P53667 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.3□□□□□ -0.12
LIMK1P53667 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.3□□□□□ -0.12
LIMK1P53667 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
LIMK1P53667 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.29□□□□□ -0.12
LIMK1P53667 AC006504.5-208ENST00000588784 2401 ntBASIC14.29□□□□□ -0.12
LIMK1P53667 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.29□□□□□ -0.12
LIMK1P53667 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 AC027139.1-201ENST00000565286 951 ntBASIC14.29□□□□□ -0.12
LIMK1P53667 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 MIR6746-201ENST00000620971 63 ntBASIC14.29□□□□□ -0.12
LIMK1P53667 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LIMK1P53667 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
LIMK1P53667 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC14.29□□□□□ -0.12
LIMK1P53667 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.29□□□□□ -0.12
LIMK1P53667 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
LIMK1P53667 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LIMK1P53667 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LIMK1P53667 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 KRT18P36-201ENST00000411618 1276 ntBASIC14.28□□□□□ -0.12
LIMK1P53667 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC14.28□□□□□ -0.12
LIMK1P53667 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC14.28□□□□□ -0.12
LIMK1P53667 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC14.28□□□□□ -0.12
LIMK1P53667 DUX4L50-201ENST00000455245 715 ntBASIC14.28□□□□□ -0.12
LIMK1P53667 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.28□□□□□ -0.12
LIMK1P53667 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LIMK1P53667 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC14.28□□□□□ -0.12
LIMK1P53667 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.28□□□□□ -0.12
LIMK1P53667 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LIMK1P53667 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LIMK1P53667 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.28□□□□□ -0.12
LIMK1P53667 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms