Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.06■□□□□ 0.32
MRE11P49959 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.06■□□□□ 0.32
MRE11P49959 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.06■□□□□ 0.32
MRE11P49959 AL139099.5-201ENST00000635274 300 ntBASIC17.06■□□□□ 0.32
MRE11P49959 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC17.06■□□□□ 0.32
MRE11P49959 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.06■□□□□ 0.32
MRE11P49959 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
MRE11P49959 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC17.06■□□□□ 0.32
MRE11P49959 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.05■□□□□ 0.32
MRE11P49959 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
MRE11P49959 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
MRE11P49959 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MRE11P49959 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.05■□□□□ 0.32
MRE11P49959 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.05■□□□□ 0.32
MRE11P49959 MIR4453-201ENST00000584019 89 ntBASIC17.05■□□□□ 0.32
MRE11P49959 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.05■□□□□ 0.32
MRE11P49959 AC025181.2-201ENST00000606994 802 ntBASIC17.05■□□□□ 0.32
MRE11P49959 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
MRE11P49959 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 AL157996.1-201ENST00000624684 2299 ntBASIC17.05■□□□□ 0.32
MRE11P49959 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
MRE11P49959 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
MRE11P49959 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MRE11P49959 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC17.05■□□□□ 0.32
MRE11P49959 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MRE11P49959 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 AC011498.7-201ENST00000624986 2027 ntBASIC17.04■□□□□ 0.32
MRE11P49959 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 DLX4-206ENST00000611342 1662 ntBASIC17.04■□□□□ 0.32
MRE11P49959 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.04■□□□□ 0.32
MRE11P49959 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 TTTY23B-201ENST00000442790 549 ntBASIC17.04■□□□□ 0.32
MRE11P49959 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MRE11P49959 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MRE11P49959 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.04■□□□□ 0.32
MRE11P49959 ALG1L8P-201ENST00000533887 760 ntBASIC17.04■□□□□ 0.32
MRE11P49959 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MRE11P49959 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.04■□□□□ 0.32
MRE11P49959 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms