Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.37□□□□□ -0.27
MSX1P28360 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
MSX1P28360 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
MSX1P28360 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
MSX1P28360 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.36□□□□□ -0.27
MSX1P28360 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 MIR769-201ENST00000390225 118 ntBASIC13.36□□□□□ -0.27
MSX1P28360 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
MSX1P28360 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 AC016700.1-201ENST00000429424 312 ntBASIC13.36□□□□□ -0.27
MSX1P28360 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC13.36□□□□□ -0.27
MSX1P28360 CHMP4BP1-201ENST00000556017 588 ntBASIC13.36□□□□□ -0.27
MSX1P28360 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.36□□□□□ -0.27
MSX1P28360 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
MSX1P28360 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 MIR6720-201ENST00000611664 98 ntBASIC13.36□□□□□ -0.27
MSX1P28360 AC091812.3-201ENST00000621362 345 ntBASIC13.36□□□□□ -0.27
MSX1P28360 CBR3-AS1-213ENST00000623647 815 ntTSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 AL162426.1-201ENST00000624141 743 ntBASIC13.36□□□□□ -0.27
MSX1P28360 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.36□□□□□ -0.27
MSX1P28360 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.36□□□□□ -0.27
MSX1P28360 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
MSX1P28360 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
MSX1P28360 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AC006504.5-208ENST00000588784 2401 ntBASIC13.35□□□□□ -0.27
MSX1P28360 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 AC215219.1-201ENST00000400706 1817 ntBASIC13.35□□□□□ -0.27
MSX1P28360 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
MSX1P28360 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 AL157407.1-201ENST00000435784 904 ntBASIC13.35□□□□□ -0.27
MSX1P28360 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
MSX1P28360 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.35□□□□□ -0.27
MSX1P28360 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 AC044849.1-201ENST00000519737 1188 ntBASIC13.35□□□□□ -0.27
MSX1P28360 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
MSX1P28360 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.35□□□□□ -0.27
MSX1P28360 AC005586.2-201ENST00000563946 837 ntBASIC13.35□□□□□ -0.27
MSX1P28360 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms