Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 MXI1-205ENST00000393134 889 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 U91328.1-201ENST00000437528 223 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 AL162726.2-201ENST00000438986 1017 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AC022137.2-201ENST00000503482 481 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 AL391280.1-201ENST00000506969 1062 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 IGHV3-71-201ENST00000523324 359 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ENPP7P5-201ENST00000541031 1031 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AL359881.2-201ENST00000602973 570 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AC145423.3-201ENST00000615987 467 ntBASIC11.15□□□□□ -0.62
HLA-DMBP28068 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HLA-DMBP28068 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC11.15□□□□□ -0.62
HLA-DMBP28068 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DMBP28068 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.15□□□□□ -0.63
HLA-DMBP28068 AC009093.2-202ENST00000620513 2079 ntBASIC11.15□□□□□ -0.63
HLA-DMBP28068 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
HLA-DMBP28068 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
HLA-DMBP28068 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ACKR1-201ENST00000368121 1240 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 POM121L8P-201ENST00000417732 1281 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 POM121L9P-203ENST00000441984 1285 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
HLA-DMBP28068 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
HLA-DMBP28068 KRT17P8-201ENST00000540749 863 ntBASIC11.14□□□□□ -0.63
HLA-DMBP28068 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms