Protein–RNA interactions for Protein: P25067

COL8A2, Collagen alpha-2(VIII) chain, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A2P25067 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A2P25067 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL8A2P25067 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A2P25067 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 FGFR3P5-201ENST00000564496 886 ntBASIC12.29□□□□□ -0.44
COL8A2P25067 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.29□□□□□ -0.44
COL8A2P25067 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.29□□□□□ -0.44
COL8A2P25067 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL8A2P25067 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL8A2P25067 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.29□□□□□ -0.44
COL8A2P25067 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.29□□□□□ -0.44
COL8A2P25067 GOLGA8DP-202ENST00000341390 2184 ntBASIC12.29□□□□□ -0.44
COL8A2P25067 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
COL8A2P25067 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
COL8A2P25067 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A2P25067 MTHFR-210ENST00000641407 2387 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
COL8A2P25067 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 XBP1P1-201ENST00000436573 652 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 AC006335.1-201ENST00000445200 547 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A2P25067 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.28□□□□□ -0.44
COL8A2P25067 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC12.28□□□□□ -0.44
COL8A2P25067 AC134698.3-201ENST00000523880 214 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A2P25067 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A2P25067 AC079328.1-201ENST00000560358 952 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A2P25067 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A2P25067 AF254983.2-201ENST00000612331 135 ntBASIC12.28□□□□□ -0.44
COL8A2P25067 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A2P25067 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC12.28□□□□□ -0.44
COL8A2P25067 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
COL8A2P25067 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
COL8A2P25067 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A2P25067 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A2P25067 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
COL8A2P25067 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
COL8A2P25067 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.27□□□□□ -0.44
COL8A2P25067 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A2P25067 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A2P25067 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
COL8A2P25067 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
COL8A2P25067 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 AL354702.1-201ENST00000442006 1960 ntBASIC12.27□□□□□ -0.44
COL8A2P25067 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
COL8A2P25067 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A2P25067 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A2P25067 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms